Array 1 422536-428749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFXU010000013.1 Parahaliea sp. F7430 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 422536 28 100.0 32 ............................ ATCAATCCAGTTTTACGCATAAAGCAGAGCAT 422596 28 100.0 32 ............................ TTTCGGAGCCTGTCATTTTCGCTGGCCATGCC 422656 28 100.0 32 ............................ CTATCGGCAATGTGGCCCGTAAAGCGCTTAAA 422716 28 100.0 32 ............................ ACTCTGCTATGTCCTGCAACGCCTTTCGGAGC 422776 28 100.0 32 ............................ ATGCGCAGATTGCTGGCAATGTCGCTAGCGCT 422836 28 100.0 32 ............................ TAGCTTGATATGCGACCACAGCAGAAGGCCGA 422896 28 100.0 32 ............................ GAATACGTCTATGTTCCTGTCGAAGTTGAGGT 422956 28 100.0 33 ............................ CGGCAGTGCTTCCCCCCTCGTGCATGTCATTAA 423017 28 100.0 32 ............................ TCCGGTTTATTTGTTGTCGTGAATAGGCTCCT 423077 28 100.0 32 ............................ ACTGCCTTGTTAGCTAGCGCCCGCATCCACGC 423137 28 100.0 32 ............................ TCCGGTTTATTGGTTGTCATGTCTGGGCTCCA 423197 28 100.0 31 ............................ AAGCGTCTATTTCATCACTGAAGCTCACGCT 423256 28 100.0 32 ............................ AGCACTCAGGCCAAGCTCAGCTATGGCGTCTT 423316 28 100.0 32 ............................ GAGGAATCCGCCTGCTAGTGTGCTGCCGATAC 423376 28 100.0 32 ............................ GTTCAGCATCCTTACGCAGCTTCTCGCACTCG 423436 28 100.0 32 ............................ TTACATCACGGACGATGAAGCGCTACAGGTCG 423496 28 100.0 32 ............................ GCTTTGTTTTTGCTGATACAGGGAACGAACAT 423556 28 100.0 32 ............................ ATACTGACCGCTCTAGGGCGCTTAGAGACGTG 423616 28 100.0 32 ............................ TCCTAGTGTCGCTCAGCACTTCCACTTCCTGC 423676 28 100.0 32 ............................ ATGCGGATACCGGGCAAAAGTCAGTGATACAC 423736 28 100.0 32 ............................ CAAACCCGCTGCAATGTGTTTCCAGTAAATAC 423796 28 100.0 32 ............................ AACAACAAAAGAATATATAGCCATTTACGAAA 423856 28 100.0 32 ............................ AGCTTGAAGAGTGTTTCAAGCTCGTCCATGCT 423916 28 100.0 32 ............................ TATTAGTCTTACTCGCCCTTGGGCTGTTTCTT 423976 28 100.0 32 ............................ CTACGTTGTTGACGAACCATGGGAGTGCAGGG 424036 28 100.0 32 ............................ ATGTTGCCGTTGGCGGTAAACTCAGCATGATG 424096 28 100.0 32 ............................ AAGTGTTGCACGCTCGGCCATTCTCGCGTGGC 424156 28 100.0 32 ............................ TAACTAGGTCATCGACTGTTATTTCATGCCGC 424216 28 100.0 33 ............................ CTTCTTGCTTGCACTACAGGTACTCAGGGAGCA 424277 28 100.0 32 ............................ TAGCCTCTCGTGAGACCGCGCAGCGCCATACA 424337 28 100.0 32 ............................ AATACGGCATTAACAAGCGGTGCCGAAGGGTC 424397 28 100.0 32 ............................ ATCTGCACTGAGTTACCAAACTCTAAATTATT 424457 28 100.0 32 ............................ AAAGAAGCTAATCAAGTCTTGCAGGCTGATAT 424517 28 100.0 33 ............................ CTTTAGCTGAATGTGCTTGTCGGTGATGTTGAA 424578 28 100.0 32 ............................ ATTGGCATTACTGATTCACAACTGTCATTACC 424638 28 100.0 32 ............................ ATCTGAAACTCGCACTATTTGCGCAGTGTTGC 424698 28 100.0 32 ............................ TGAGCGCGTCTTGATCAGATTAATAGGGCTAG 424758 28 100.0 32 ............................ ACTGCACGATATGTCGCGGCGAAGCGGTCACG 424818 28 100.0 32 ............................ CTGTGATAGATCAGATTGTTGGCGCTATGGAT 424878 28 100.0 32 ............................ AACCTCATCAACAGTGAGGATGATGTGGCGAT 424938 28 100.0 32 ............................ GTGAAGCTGAGACGGATTGTGTTAGTGCAATA 424998 28 100.0 33 ............................ GATGCGGGAACGTCGCGGCCATCTGAAACTCGC 425059 28 100.0 32 ............................ AAGGTCTTTGATGGGCTGGCGCGGCACATTGA 425119 28 100.0 32 ............................ CCCTCGATAATTGCCTTCAGCTCGGCATCACT 425179 28 100.0 32 ............................ ACTACAGCGAACCCATGTTGTAGACTCATTCT 425239 28 100.0 32 ............................ CTGAAAGGCACCGATCAACAGTTGACGGGGTT 425299 28 100.0 32 ............................ TACATGGGACCCCGAAGGACAGTACCGTCGCA 425359 28 100.0 32 ............................ AGTAGCTGGTCTATTTCCTCCAGCGCCTTACC 425419 28 100.0 32 ............................ AATGACCACCTTCCAGGCGGGCTAATCGAGCA 425479 28 100.0 32 ............................ GACTCGCAAGGGTTTATGGGTAGAGAGCGTCA 425539 28 100.0 32 ............................ CAAAACACACGCGGGCATCGTATAAGCGTCTG 425599 28 100.0 32 ............................ AAGCTTCAACATGCTTGCACTGCTTGGTGATG 425659 28 100.0 32 ............................ TCACATTGTCTTTTCGCCCCTAATGCTTGCTT 425719 28 100.0 32 ............................ AGATGATGAGGGGCATGTTGTTACGGTATCGC 425779 28 100.0 32 ............................ ATCACCGCAAACAGCATGGCACTGAATGCCAC 425839 28 100.0 32 ............................ GCGGCTGATCGAGGACGTGCCTTCGGTCACTA 425899 28 100.0 32 ............................ AAGGTCTGGCCTAGCTGTTCAGTATGGCATCA 425959 28 100.0 32 ............................ GTAACACAAGGGGCTTAAATGCTAAGCGACAT 426019 28 100.0 32 ............................ CACGCAGATACGGCACAGGAATGCCGGACTAT 426079 28 100.0 32 ............................ TCTATAAACTTGCTGCTCTTTAACCATTTACG 426139 28 100.0 32 ............................ AACACCCCCGCATGTTCAAATTACGCATTACA 426199 28 100.0 32 ............................ ACAGGATACGGCGTGCTAGCTAATGGCTTGCT 426259 28 100.0 32 ............................ AACGCACAAGCCTACAGCCGAGCAGCGCGCGC 426319 28 100.0 32 ............................ TAGCTGGGTCGACACAGGTTTTGATATTGACA 426379 28 100.0 32 ............................ TTCCCGTTCATGATGATGTCTTGGAAGAAGTC 426439 28 100.0 32 ............................ TCATGTAATCAATCTGAGCGCGCTTTTTACGC 426499 28 100.0 32 ............................ AGCCACCGCTATTTCTCATTGAGCGCTTGAGT 426559 28 100.0 32 ............................ AGCAGATGATTACACAGTAGCAATACCGACTC 426619 28 100.0 32 ............................ TCAATTAGTGCCGCAGCGTCGCGCCCCGCGAG 426679 28 100.0 32 ............................ GCGAGCTGATGATTTGCGGGACTTTCGTCCTG 426739 28 100.0 32 ............................ GACAGGGTCTTCCAATCCCGCAGGGCTAGTGC 426799 28 100.0 32 ............................ GTACATTAGATGCTCTCTGCCAAGAGCTGGTC 426859 28 100.0 32 ............................ CCCTTCTTCGCGTTGTTCCAAATCGCCTCATG 426919 28 100.0 32 ............................ TTGGGACAACCTGCGTGATGGTGCTATGGGCG 426979 28 100.0 32 ............................ ATTAGTAACAAGCTCAGGCCCAAGCTCAAACA 427039 28 100.0 32 ............................ GCTCACGATCACCCACCGGGCCGAGCACATGA 427099 28 100.0 32 ............................ TGCAGTCAATCTCACGCTGACCACCACAGGCT 427159 28 100.0 33 ............................ CTGTCGGGGAATCAGTTGCTTTGAAAGAATCAG 427220 28 100.0 32 ............................ CAGATATCAAGTCTACATCGAAGAAAAACCAT 427280 28 100.0 32 ............................ GCGAGCTGCTGCGTGAACCCTTGGTAGGTCTT 427340 28 100.0 32 ............................ CTGTGCTTAGCCTAATCCTCGCCTATGCCTTC 427400 28 100.0 32 ............................ ATTGCTTCGTCATCGGTGATGTACGCGCTAGC 427460 28 100.0 32 ............................ TTAGGGCGCGCGGCGACCGGTACGGGGACTTC 427520 28 100.0 32 ............................ CTAAGTAGTAAAAACTTAGGGACAAACACCCC 427580 28 100.0 33 ............................ ATCAAGACCAAACATTTCCTTAAAGTGGACAAG 427641 28 100.0 32 ............................ AAGCTAGATCAGTTTATGTGGATACAGCTTAA 427701 28 100.0 32 ............................ TTTCCGCGAAGCTTGAGCAGCCCTTCAGCTTC 427761 28 100.0 32 ............................ GTCCGGTAGGTTAACCTTCTGCCACAGTAGAG 427821 28 100.0 32 ............................ ATTATAAGACCATTGAATCAACATGCGAGTTT 427881 28 100.0 32 ............................ AGACCTAATGTCGGGTATCAGCGGAACTACTC 427941 28 100.0 32 ............................ TAACATCGTTCTCAGTTAGTTTTACCGTCATA 428001 28 100.0 32 ............................ CACACTTTAGACTTAACAGATGCTTTTGTACC 428061 28 100.0 32 ............................ TTCAAAGAGGCAGGGCTTACTATGTACTGTAT 428121 28 100.0 32 ............................ CTCACTTGTCCGAAAGGTCGGGAGCAAGGGTT 428181 28 100.0 32 ............................ AAACCTAGCGACATCAACACCGATAACGATTG 428241 28 100.0 33 ............................ TCTACGCCGTCATCAAACTCTACTGCCATTTCT 428302 28 100.0 32 ............................ TCAAGCTTGAACTCAATTTCTGATCTGAACTG 428362 28 100.0 32 ............................ TATAATAGTTGCTAACGACAAATATATTCTCG 428422 28 100.0 32 ............................ AGTTAAAAATTGGCACATTTAATGCGGGTGAC 428482 28 100.0 32 ............................ CAGTGCTGGGCCGACCTTTTTTATCTTGCCCA 428542 28 100.0 32 ............................ CTGGACTGTGACATCAAACTCCACAGCTGCGT 428602 28 100.0 32 ............................ GACGACCGGGACGTGTGGATTCGCGTCGGAAT 428662 28 100.0 32 ............................ GTTTTCGGTACTGGTCAGGTACCGTTTTCGGT 428722 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 104 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GGTGATTTGGATAGCTTACAAGACACAGGCTGGTTAACAGGTATGCGAGACCATGTGGTTTATCGTGATGTGCAGCCCGTACCTAGTAACACTGAGTATGTAGAAGTACGACGAGTGCAAGCTAGGTCAAACGTTGAACGTCTAGTTCGACGGAGCGCAAAGCGCAAGGGTATTAGTGAAGAACAAGCTCGGGAAGCCTATCAAAATGCACAACCAAAAATGTTACGTTTGCCCTTTATAAGCCTTAACAGTCAAAGTAGTGGCCGGAGATTCTCTTTGTTTATAGAGCAAGGAAGGCCGCAAAAAGAGTCGAAAGCAGGCGAGTTTAATCGTTATGGAATAAGCCAAACCGCGACTGTTCCTTGGTTTTGACCCTTTTTTTACAAGTTGGCAGCAGGCTAAGTAAATCAATGACTTACGCCGGCTGCTTATAAGAGGGTTTTTTTATCACAAACCTCTCTGGCTCTTTAAAACTGCCGGCATAAGCCTTAAAAGCTCTA # Right flank : AGCAAACTGTGGGTGAGAAATGACGGTTTTAACCCGCCTATTCTCGATGAATGGCAAACGGTGACCAGGCTTGTCTGACCGCCATCAATTCAAGTGAATTGACGTTGAGGTGTTTTGGCAGGGATGCCAGCCACCAACAGGTGTCGGCGATATCCTCTGGCTGAATGGGCTCAGCACCAGCGTATAACTTATCGTGAGCGCTTTGGTCACCGCCGGTACGCACTAGGGTGAATTCACTTTCAGCTAAGCCCGGTGCCAGGCAGCTGACGCGCACGCCAGTGCCCTGTAAATCGCAGCGCAGGGCCAGTGAAAACTGTTCCACAAAGGCCTTGGTGCCGCAGTACACATTGCCACCGGGGTAGGGCCAGTGGCCCGCCACCGAACCAATATTGATAATACTACTGCCAGCACCTTGCTCAATGACTTTGGGCAGCAGGGCATGGGTCACGGTGCTAAGGCCTTTGACGTTGGTATCAATCATTTGGTGCCATTGCTCGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //