Array 1 1-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKT01000038.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48698 N48698_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 62 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 123 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 184 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 245 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 306 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 367 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 428 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 489 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 550 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 611 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 672 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 733 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 794 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 855 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 916 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKT01000137.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48698 N48698_contig_137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 68 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 129 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 190 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGTG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //