Array 1 105734-106603 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUM01000004.1 Chromobacterium violaceum strain LK6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105734 28 96.4 32 ........T................... GCATCCGCTGGCTGAAAAAAGAAGAGGCCAAC 105794 28 96.4 32 ........T................... AGGAAAAATGGCGTGATGGCATATGACGATTG 105854 28 96.4 32 ........T................... AAAGCCTACGTCCGGCTTTATGAGCGAGAGGA 105914 28 96.4 32 ........T................... TGATGCCGGCAGACAGCCACCCGATCGGGCTC 105974 28 100.0 33 ............................ AGCAATTCCGACCGCGGCCAGGTAATGCTGGTT 106035 28 100.0 32 ............................ ACAGATAAAGCAGGCTTTTTTCAGCCGCTATC 106095 28 100.0 32 ............................ ACCAAGTCCTTCCGCGCTGATAGATCGACATA 106155 28 100.0 33 ............................ CATGCCGCTGTCGGCGATATCGATGGCCTCGAT 106216 28 100.0 32 ............................ GATTAGCTGCAGCACGCGCCGCTCAATGCGGC 106276 28 100.0 32 ............................ CGCATCATGCGCCGGCTCATGTCGCCGTACAG 106336 28 100.0 32 ............................ ATTTGCTTCAGCGCCTCGCGCGACTCCTCGCC 106396 28 100.0 32 ............................ AACTCGGATGCCCGCCATGAACCGGTCAGCCT 106456 28 100.0 32 ............................ ATTGCATGGCCTGCATCACCACTGCCATGCAG 106516 28 100.0 32 ............................ AGCAGCCTGGAAGACCTCTACTACGTCACCGA 106576 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CCGTTGGCTCAGTGGCTTCGCCGACCACGCTATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCGCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCTGGCGGATACCGGACGAAACGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCCGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGACCGCGACCCTTTTCTCTCCCGCCAACCTCCACCTTTTAAAATCAGATACTTAACATCATGCCAGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : AGTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTGCGGCACAATCCCGCCTGCAAGGCGGTGTTCAGCGCGCTGGTGGAAGGCATGCGGCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAACAACGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTAGCCGTGGCAGGCAGCTTGCGCAGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGTCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49342-49068 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUM01000024.1 Chromobacterium violaceum strain LK6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49341 29 89.7 33 ...........ATG............... CTCGGTACACGCAGCAACGCGTCCGCAACAGCC 49279 29 89.7 32 ...........ATG............... ATGGCGGTCACCAGCAGGCCGCCGACGGTGTA 49218 29 100.0 32 ............................. GCCTTTACACTGTCAAGGGATTTACATAGTGA 49157 29 100.0 32 ............................. TAAGTCGCCGTCAACTTGCCGTTGTCGTCGCG 49096 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 5 29 92.4 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGTTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAACTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTAGGGTGGGTTTTTATCTTTAGAAATCAGCATCTTGAGATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCAGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57254-56615 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUM01000024.1 Chromobacterium violaceum strain LK6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57253 29 96.6 32 ............T................ GCGACGCATGAGCCCGCAGGCTGACTGGAAAG 57192 29 96.6 32 ............T................ ACCGACCCGATGGACTTGATCATCTACTCGCC 57131 29 96.6 32 ............T................ CGCGGGCCAAATTATACGCCCTGCTCGCCGCC 57070 29 100.0 32 ............................. CCGTGCGTGACTATAAGGAAGGGGAAAGTGCA 57009 29 96.6 32 ............................A GTCGGCGTGTATCTGGCGGCCGATGTAAAGAC 56948 29 96.6 32 .........................G... GCCGAGATCAAGCACTTCAATGCCAGGAAGGA 56887 29 100.0 32 ............................. CGGTTATGCGCCACTCGGCCTGATTCTGCGCA 56826 29 100.0 32 ............................. GACTGCTGGGTTTGCGTCCTGGTCTTGGTACG 56765 29 100.0 32 ............................. GATCGTCTATCCGCATGTTTCGGGCCGTAAAA 56704 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 56643 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGATGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGATCGAGCGCCTGAGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGGCTAGCCTAAGCCTTGCTGTTGAGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGCCTGGAAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTACTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //