Array 1 138631-136589 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYP010000004.1 Corynebacterium diphtheriae isolate YEM0047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138630 29 96.6 32 ............................G TTCCGTAGTCACCTAGTACAGGTACTGCGGCC 138569 29 100.0 32 ............................. ATCATTCCCACAGCTAAACGGCTTGCCAAAAT 138508 29 96.6 32 ............................G GACGAGTCCATCTCTGCCGAAAACGTGATCGC 138447 29 100.0 32 ............................. GATTGGATTAAGCCGGATCATCTTCACCTCCT 138386 29 96.6 32 ............................T GATTGAGCTTGTCACATTCGGCGTCGAACCGA 138325 29 100.0 32 ............................. GTAAAGGTATGTTGGGGCAAAGTAGATTTCCC 138264 29 100.0 32 ............................. CATCTGCCATTTTGTCAAATCTTTTTGGAAAA 138203 29 100.0 32 ............................. TTTTGGCCCTGTGGAGCCGTAGGTTCGTGCGA 138142 29 96.6 32 ............................G TCTCCTTGATCTTGCCAGGCATTTCCTTAACC 138081 29 100.0 32 ............................. GGAGGTAGCCGCCGATTCTGCTAGCTTTTTTA 138020 29 100.0 32 ............................. CTGTCTACCGTTGTTGGCTCACCCATAACTAG 137959 29 96.6 32 ............................G AAGAACAAACGGAACTCGCCGATTCCCTCGGA 137898 29 100.0 32 ............................. ACCACCCCAGTTGTAGCGCGCACCCTCAAGAG 137837 29 100.0 32 ............................. ACGCCACGACATGGTGGAGCCACCGTGGGAGG 137776 29 96.6 32 ............................G AAAAGCCCCCACAGGGTGGAGGCTCAAACAGA 137715 29 96.6 32 ............................T AAGGTGCGAATACATAATCCTGGTATCAGGGA 137654 29 100.0 32 ............................. TTGAGCTGGGGGCCTAGCAATGATCGGCAAAA 137593 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTAG 137532 29 96.6 32 ............................G CACGCGATGGATTCGGCGCGGCTTGCTGCGGA 137471 29 100.0 32 ............................. GATCGGTTGGGCGTATCAAGATGTTCTTTGAT 137410 29 96.6 32 ............................T GCTCTTTCGAGTTTCAGCAAGCCCTTTCTCCG 137349 29 100.0 32 ............................. CAAGTGGCTATCGGTATCGAGGCGGCATCTAG 137288 29 96.6 32 ............................T TTTCCGTGAGCATCATAGACCGTCAATCCCAG 137227 29 100.0 32 ............................. CACAGACGATGCGACTTCCTCAATCGAGAAAA 137166 29 100.0 32 ............................. CCTAATTTGGTGTGTGACCCTAGTGATGGGAA 137105 29 100.0 32 ............................. AACATGTTTGACACGGAGGGCAAAATGGACAC 137044 29 96.6 32 ............................T CATGAACGGATATGAAAAATGCGGTTGGTAAA 136983 29 96.6 32 ............................G GCTCGGATACCGTCGATAAGCTGCCGGACGCC 136922 29 100.0 32 ............................. TCCCAGCACTCCTCCATCGCTTTCCGCTCCGA 136861 29 100.0 32 ............................. ATGAAAACATGCTCAAAACTTGACACAGGACG 136800 29 100.0 32 ............................. TGTGGCTGCCCAGATGGGACAAAGTCTGATCG 136739 29 96.6 32 ............................G ACTCGCCCTACATAATCGGGGTATCAATACTG 136678 29 96.6 32 ............................G CGCTACGTTGACCTATCGAGGCCTTCCTCTGT 136617 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAAATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGTTCTAACTGTCTCTAAACATGCAGCTTGATAAGT # Right flank : AAAGCGCGGATGGCGTCGATGTATTTGCGTCAGCAATATGACGCGAATATGTCGAAGCAAGGCAGATACATGCGGACTGATCGGCCGCGATTGATGCCGGAAGAAATCTACAAGATTGCAGGTGGCGACCGAGATATTGCGGTCTCATTGCTGCACAAGAACGGTTTCTTCTTGGATGCCTCGCCAACATTGGATTCGAAGCTTAGTTTTTTTACACGGGACAAAGTCGTGAAAGAAGCGATGGAGAGCGCTCGTGTGAAGTTGAAAGCACGGTATGGCAAAGAGTTAAAGCGTGAGGCGATTAAAATTGGTAGTGGTGATCCTCCGAGCGAACCGCCACGATGGTCGAAAAATGGCGGTGGTGATGATGAGATTCGGAGGCGGTATTTCGAGGATTTGCGTACAGCGGATAAACGCGTGCCAATTGAACACATCGTTACCGGGAAGGTGCATAAGAACGTTATCCAAGGTGCCCATGATCATTCCAGACGTTCATGGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //