Array 1 11330-12678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITI010000015.1 Xanthomonas campestris strain 71 Contig_15_260.229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11330 28 100.0 32 ............................ AAGGTGATCGAAGGCAAGTACGAAAACGCACG 11390 28 100.0 32 ............................ ATCTCGCGCATCCTGTCGGGCCATTGCGAGCC 11450 28 100.0 32 ............................ TACGCCAGTTTCATCCAATTCTTGGTGATGCT 11510 28 100.0 32 ............................ CCTACGCCGCAGGGCAGTGGGACGACATCATG 11570 28 100.0 32 ............................ ACACAGAGGCCGCGCCGCGGCCTACCGCTGGT 11630 28 100.0 33 ............................ GCTGAGTCCGCGGCACATTGAGGCGGCAATCGT 11691 28 100.0 32 ............................ TCATGGCTGAGTCAACACGCGCCCGCCTACCG 11751 28 100.0 32 ............................ AACGAGCTGCGCTTGCGTGCCGCCAGGGAGGC 11811 28 100.0 32 ............................ TGCGGAGTGTTCGGATGATCAGCGACGAATCA 11871 28 100.0 32 ............................ GCTACGGCTGGGCGCTCACACTGGGCGCCGGT 11931 28 100.0 32 ............................ AGCAGCGCGACAACGACCATGGCGAAAGTTGC 11991 28 100.0 32 ............................ GCACCGGCGCCCAGTGTGAGCGCCCAGCCGTA 12051 28 100.0 32 ............................ AATAAGCCGAATGCATACATCACTGGCGCAGG 12111 28 100.0 32 ............................ TCGATCCGCAGCTGCCGGCTGGGGGTGGGTGG 12171 28 100.0 32 ............................ TTCCTCGAATGGGTCGAAAAGGAAGTCCGAGA 12231 28 100.0 32 ............................ GGAACGCTACGGTGTGGTCCCCGTAGATCGCG 12291 28 100.0 32 ............................ CGAAACCGCTTCACCCTGACGTTTATCGCATC 12351 28 100.0 32 ............................ ACGCCAAGACGAAGACCAAGACCGCCAAGGGT 12411 28 100.0 32 ............................ ATGCATTCGAGCGTGCGCGCCACGGTGAACGC 12471 28 100.0 32 ............................ AAACTAAAGGAGTTTTAACCCATGAAAACAGT 12531 28 100.0 32 ............................ ATTCATTGCGTTACGTGCTGCGAAGCTCAAGT 12591 28 100.0 32 ............................ GCCGCGCTTACGGCCGCCGGACATGAAGTCCT 12651 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCGCGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACACTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGTCCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCGAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : ATTGCACACCACTAGGCAAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13332-7169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITI010000128.1 Xanthomonas campestris strain 71 Contig_131_792.559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 13331 28 100.0 32 ............................ TGCGGGGACATCGATCACCGAGCCGAACCCCT 13271 28 100.0 32 ............................ TATCACGGTGGCCATGTGAGCCAGCAGGCCTA 13211 28 100.0 32 ............................ AAGAAGGCTCCAGGGCCGACCTATGGCGTCAA 13151 28 100.0 32 ............................ ATAGCCCACGCCTGCGCCCAGGTGATGAGATC 13091 28 100.0 32 ............................ TCTGCGGCCGTTGGCGATGAGGCGACCGCACG 13031 28 100.0 32 ............................ TCATTCAGACCGATGGCCACTGCCAGGCTGGG 12971 28 100.0 32 ............................ TCGTGCAGCTACCGAAAGGATGCCCATTGCAT 12911 28 100.0 32 ............................ TGGTCAGTGAAGGCCTGGCGACGTTCCAGGTA 12851 28 100.0 32 ............................ ATCGGCATCATGTCCAGCTTGCCGGCATCGCC 12791 28 100.0 32 ............................ TACTGCAGTCGAAACGTTCCACGACGGGGAGG 12731 28 100.0 32 ............................ TGATCAGGTTCAGCTGGGTCCGTCAAGTAAGC 12671 28 96.4 32 ...................C........ TTCATGCAGTGCCTCAAGTCCGCTCGCGCTTA 12611 28 100.0 32 ............................ AGGTTCCGCAGCCGGTATAAGGTCGGCGCGCA 12551 28 100.0 32 ............................ ACGATGATCGACGTGCACAGCGGCGACGGCTT 12491 28 100.0 32 ............................ ACGCAGCAATGCCCGATGCCGCAACCCACCGA 12431 28 100.0 32 ............................ TTTCATCAGGTTGCGACGCTGGATGAGGCGAC 12371 28 100.0 32 ............................ AGCGGATAGCCCCGAGCGCGTCGCCCTGGAGG 12311 28 100.0 32 ............................ TATCGAGGAACCGGTTTACGGTGTGGCGGGGG 12251 28 100.0 32 ............................ GCACGCTGTGCACCGACAGGGGTAGCGCGCCG 12191 28 100.0 32 ............................ GACACGGTTCCGGCCTGAACGATCTTCTGCAC 12131 28 100.0 32 ............................ TGATTCGGGCTGAATGATCCTTTGACCTGCTC 12071 28 100.0 32 ............................ GATCACAGAAGCACCGCCGCAGCGATACACGC 12011 28 100.0 32 ............................ GACAGCCAGACCACCAGGCCGAGTAGCACCAG 11951 28 100.0 32 ............................ AGTGTTCGGGCAGGGCCAGCGCTTCGCACTGG 11891 28 100.0 32 ............................ TGCAACTGGTCACCCTTGAGCATCGGAATCGT 11831 28 100.0 32 ............................ GTTACGCTTGGAAATATCATCGTACGCGGCGC 11771 28 100.0 32 ............................ AGTTCCGTGCGCACGATCCACACGTGACGCAG 11711 28 100.0 32 ............................ ACCAGCGGCGACGTGCTGCTGTTCGCCGTCGT 11651 28 100.0 32 ............................ TCGACCGAGTTGTACACCGAGGATTCGGTGTC 11591 28 100.0 32 ............................ AGCGCGCCCATGCGGTCGCCGTCGTCGCGCCC 11531 28 100.0 32 ............................ TCGATCGGCCCGACCTTCTTGCGGATCGCCAG 11471 28 100.0 32 ............................ AGACCATAGCGGATCAGCCGGCCTGTCTCCGG 11411 28 100.0 32 ............................ AGGTACCGTCTGCGGAACAACGATGGTCGCCC 11351 28 100.0 32 ............................ TGGGAGACGTTGGTGGTCCATTCCTGCAGCGT 11291 28 100.0 32 ............................ ATTGACGGCAAGGCGTACACGCATGGTCAGTT 11231 28 100.0 32 ............................ TTGCTGGTAGACAGGTGACGGTGTGCGTCGTA 11171 28 100.0 32 ............................ ACGGCCACACACCAGCCCGTCGCGTCGTGGAT 11111 28 100.0 32 ............................ AGGCCGCCGAGAACATCCCAGACCCGGAAGCT 11051 28 100.0 32 ............................ TTGATCGCGGACTTGGTTGGTCTGCTGAATCT 10991 28 100.0 32 ............................ ACCTACGCCGATCGCGCCGATCGTGGTCAAGC 10931 28 100.0 32 ............................ AGATCGCCCGCCGCCTGCCGGAATGCAAATCC 10871 28 100.0 32 ............................ CGCAGTAGCTCGATCGCCTCGCGCACCTGGCC 10811 28 100.0 32 ............................ AGTCCGAAGCGCTACGGGTCCCTGAGTGCGCA 10751 28 100.0 32 ............................ ATAGGACCACCCCGATGCTTTCGTTCGATGAG 10691 28 100.0 32 ............................ GGCACCGCCGGCAGATCCACACCGCTGCCGCC 10631 28 100.0 32 ............................ AACCTGGAGGTGCGCGGCATCTACGCCGGGCA 10571 28 100.0 32 ............................ AACCTGGAGGTGCGCGGCATCTACGCCGGGCA 10511 28 100.0 32 ............................ TCCCGACATCTGTTTTCGCCGTCACACATGGC 10451 28 96.4 32 .................T.......... TCCACCAGAGGCCGCAACTTGTCGGCCTGGCG 10391 28 100.0 32 ............................ AGCATCGGTTTTTTGCACGACGTGCAGCAATC 10331 28 100.0 32 ............................ GCAAGGGCACGCGCAACGGCTGGTCGATCCTG 10271 28 100.0 32 ............................ ATAACGATTGGTCAGCGTGGCGCCGTTGACAG 10211 28 100.0 32 ............................ CACCGGCAATACGTGTGACCAAAACGAGGAAA 10151 28 100.0 32 ............................ AGCGGGTATTTCCCGTGGGGTCGTGCAAAAAC 10091 28 100.0 32 ............................ TGGGCGTCGTTCTTCCAGCCGGCCTTCTGGCT 10031 28 100.0 32 ............................ AGCGCCGCTGCTTCAGGCTCGGCCATACGCGC 9971 28 100.0 32 ............................ AGCTGCAGGCCGCGGTGCGGCCCGCTGGTGCA 9911 28 100.0 32 ............................ AACTGAACTTGGCGTCATCGCAGATGGCTTGA 9851 28 100.0 32 ............................ AGGCGAGCGCGGGAAGCGTGTGCGGCGCGTTC 9791 28 100.0 32 ............................ GACGAGGCGAGAACCACGAGAGAGGCAATCAC 9731 28 100.0 32 ............................ TCTTCCCACGTCAGTTGCAGGCGCAGCGATTG 9671 28 100.0 32 ............................ AGCAGGCGCGAAAACACCGTGGCATTGCGGAT 9611 28 100.0 32 ............................ AGGTTTCCGTCATGCGGAATGATGTGATCGAC 9551 28 100.0 32 ............................ TTAACCCGTCGCATGTCGGCCTGGATGAGATC 9491 28 100.0 32 ............................ AACACGTGGCTGGCGCCCATCGTTCGTGGAGC 9431 28 96.4 31 T........................... TATAGGTCCGGGTCGATCACCTTGATGATGG G [9405] 9371 28 100.0 33 ............................ AGGTCGTAACGCGTTTGCGCAGACATCCATTCC 9310 28 100.0 32 ............................ TGGCCAGGTCGACGCCTGGGCTGACATCGAGC 9250 28 100.0 32 ............................ AGTAGCGTGCGTGGCCGGCCGAAGTGCTCGAG 9190 28 100.0 32 ............................ AGGTCGTCCTGCAGAGCATCGCCCGCAGGGAA 9130 28 100.0 32 ............................ TAGCATGTCCAGCAGCTGCGCGTGCATGCGCT 9070 28 100.0 32 ............................ ACTGCAAAACAGGCAGCCTGACGCATCGCTGC 9010 28 96.4 32 ............A............... TTACGCGCCTTGCGCTTCTCCCGCTCGGTCTC 8950 28 100.0 32 ............................ AGGCCAAGGGCCTGCGGACCACGTTCAACTAC 8890 28 100.0 32 ............................ ACATGTATCACTGCGCGGTACTGCATGTAGAT 8830 28 100.0 32 ............................ TATGCGTCCGCGCGTGCCAAGCCGCGGAAGAA 8770 28 100.0 32 ............................ ATGTAGGCCTTGTGCAGCGGGTTCTTTGCCTC 8710 28 100.0 32 ............................ AGCCGCGGGAAGGCGCCCACTGGCACGAAGGG 8650 28 100.0 32 ............................ CTTGGGATACGAAACAGCCGAGGTCCATTCGT 8590 28 100.0 32 ............................ AATGAGATTGACAACGCGCGAGATGGTCGCAG 8530 28 100.0 32 ............................ ACGTCGTTCGCAGGCGCGGGCTGCATCCCGAA 8470 28 100.0 32 ............................ ATCCCGCTCGACGAGATGCCAGAGCCGGACGG 8410 28 100.0 32 ............................ CGGAATATCTCCGTGCGCTTATTGAGCAGTCC 8350 28 100.0 32 ............................ GCAGACTTCGGTCGGAACTTGGGGACGAACTG 8290 28 100.0 32 ............................ GTAGGAACTAGCAACATGAACGAACTCGACGC 8230 28 100.0 32 ............................ AACGACGGGCCGGTCGAGTTCCACCTCGAGCA 8170 28 100.0 32 ............................ TAGTCATGTTCCAAAGCGACAACCCAGAGGGG 8110 28 100.0 32 ............................ GCCTACAGCCGCGCATTGTCGGGTAGCGTCAA 8050 28 100.0 32 ............................ CTCTGTAGTTGCACTTGCTGCCGTAGATCATC 7990 28 100.0 32 ............................ ACTGGCGAACGTGTGACGCACGGGGCCGTGCC 7930 28 100.0 32 ............................ ACTACGGCCGCACCTTCGGTAGCGCTGTTCTC 7870 28 100.0 32 ............................ TTGGCGCAGAACACCGCCGCGGTGCAGGTAGA 7810 28 100.0 32 ............................ TCCCAGCCTGCCCGCCGCAATCGCCGCGAGGC 7750 28 100.0 32 ............................ GCCTAAGTGCATGGCCATTGATCGCTACGATC 7690 28 100.0 32 ............................ AAGCAGGTCCGCCGGCACAAGAAGGACGCCGA 7630 28 100.0 32 ............................ CCGCGCCAACAGGCTGCGGGGCAGGGTGGTAG 7570 28 100.0 32 ............................ CAGGGGATAGCCGGCCACGATGACGTTGCGGC 7510 28 100.0 32 ............................ AAGACGCATTCGGCGCCATTGGTCCATGTCTT 7450 28 100.0 32 ............................ AAGGGTGACGAAGACAACTACGATCAGAAGCT 7390 28 96.4 30 ......................G..... TCGTTCCGCACGGGTACCGCATGCATCGCA G [7364] 7331 28 82.1 107 ....G.......AC......T..T.... AAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCCATGCATTACTGGACC 7196 28 67.9 0 AC.......T.T.G....T.TC....T. | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 102 28 99.3 33 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGGGAAACCTCAGGGTCA # Right flank : GAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGTCGCGTGGCGGGCTTATCTGCGGATTCGGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACACGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTTGCCTCGCCGGTAATACACCGCCACCGCCTTACCGTAGACCGCAGGTGCATCGACCAATCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCACTGCCGAGATTCAGTGGCGCCAGATGCGCGCCGAAGCGTTCGGCATCGCGGCCTTCCGACGCCAGGGGCTCACCGTTGATCTGCAGATGGCCGTCGATCAAGTCGACCCGGTCGCCTGCCACCGCCACGACCCGCTTGATCAAGCGTGTGCCATCGCGCGGCGAGTCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //