Array 1 858006-861905 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJO01000001.1 Sulfolobus islandicus M.16.23 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 858006 25 100.0 38 ......................... TTACTTTCTTCTCCACTATCTCCCATATGTCACGCTTC 858069 25 100.0 39 ......................... ACAATAAGATAGAAGGGTCTCTCGCGATAACTCTGTAGT 858133 25 100.0 36 ......................... TTCAGTAAGTAAGTTCGATTTTACTTATCGCCCATC 858194 25 100.0 39 ......................... ATAGATATGATGAGATGGCAAACAATGTATACTAGGAAA 858258 25 100.0 39 ......................... CTGACTGGTATCAAAGATAACGCTTTCTTAGGGTTCGTA 858322 25 100.0 43 ......................... GCAGTTAGGAAAACCACCAGATTTGGCTAGTTATATAGCCCAG 858390 25 100.0 37 ......................... ACAATACCATGTGCAGAATCAATAAACAATATGCTGT 858452 25 100.0 38 ......................... ACTTGTATATCAGATATCATGTCTACTAACGGCAAATT 858515 25 100.0 37 ......................... TATCATCATTCTCCTTGATAAACCAGTCTCACTTTCT 858577 25 100.0 40 ......................... AGTTATTTCGACGTGATTTAACGCACAGTAAGATTTATAA 858642 25 100.0 38 ......................... CTTGTATGCGCACTTACGAAAAGCCAATAATACTCAAA 858705 25 100.0 36 ......................... TCAAAATATATATCGATGATTTCTTCAAGATCACTT 858766 25 100.0 38 ......................... ATAATATTCTCTCTACTATTTCTTCTTTCAACTATTCA 858829 25 100.0 37 ......................... CTAAATATTTCGTGTTTATATCAAATGCATATACTTT 858891 25 100.0 39 ......................... TTATATGTAGTGACGGTAAGTAGTAGCATCTATAACTCT 858955 25 100.0 38 ......................... GATTACTCTTCACAGATAAACATTCTTTAGGTAATTCT 859018 25 100.0 39 ......................... TTTCGTTATCGTTCACGGAATTTATCAATGCAGTTAATT 859082 25 100.0 38 ......................... TATAAGAACCTAAAAGAATTAACTAAGAGTGTTGACGG 859145 25 100.0 38 ......................... TTCATTTCCGGCTCACCCTAGCCAAATACTCTTTGAAT 859208 25 100.0 38 ......................... GATATCCATTCCTCAGCACTCTTAAATCCGCTGAAATT 859271 25 100.0 39 ......................... TAGAATCTAGCAGTACTATGACCCATATAACCATATACA 859335 25 100.0 38 ......................... CTTGTTAGTATATCTATTTTCATATTTATACACCCGAA 859398 25 100.0 35 ......................... ATTAATTCTTTTACTGTATAGAAATATCTCATTTT 859458 25 100.0 35 ......................... TCCGTTTCTAACTTATTAAAGTATTCATATAATGC 859518 25 100.0 36 ......................... GTATTAAGTCATCAGAATATCCTTCTAATGATAGAG 859579 25 100.0 45 ......................... GCTATTAACATTATTAAGTTATAGACATTTTGTCCATATTCTACG 859649 25 100.0 36 ......................... ATTGAAAAGACTTTACGAAGTATATACAAGTGCTCA 859710 25 100.0 36 ......................... AAGTACACTTTATTAGCATTTTCTGGCAAACGATTA 859771 25 100.0 40 ......................... GATATAATGATCTTGGATGAAAAAGCAAGAAAGGTGTTGG 859836 25 100.0 38 ......................... TGATTCTCATCTATCTCCTCCTCCAATTCCGCGAGGAC 859899 25 100.0 37 ......................... TTATTAATAATTTTTCGGGTGTTTTCATGTTTGTGCC 859961 25 100.0 38 ......................... AAAACTAATTGTATATTAGCAGGGTCACTTTGCACTCT 860024 25 100.0 42 ......................... GTATGCTATGCAACAGTATTTTAATCTTATTTCTCGGATCCT 860091 25 100.0 39 ......................... CTATATATTCGAGAAACAGGAATTTTCCCTGACTTATTT 860155 25 100.0 37 ......................... TATTAAAATACTTATTAGCAATCATTGCTGCACGTAC 860217 25 100.0 41 ......................... ATTAAATTCCTTTTAACATCACATAATCTTTATTTCATATC 860283 25 100.0 39 ......................... ATTAATACAATTAAGCTCCGTCTTTGCTAGACTCTTTTA 860347 25 100.0 41 ......................... CTAATGAAACATAAGAGCGAAAAGAAGTTTAGTAGAGATTC 860413 25 100.0 39 ......................... GCTTGTTTCTGATTGATGATATACCTTATTATTACTGGT 860477 25 100.0 45 ......................... ACAAGATTCGTAACACTATTGACGAAGGTAAGAACGTTATTCTTG 860547 25 100.0 37 ......................... TTTTACAATCAGATATATTGATAGTTGATTTCTGCTA 860609 25 100.0 38 ......................... TAATTTCATTTTCATTATTTCTCAACTCCCTTAATTAC 860672 25 100.0 38 ......................... TGATTCTCATCTATCTCCTCCTCCAATTCCGCGAGGAC 860735 25 100.0 39 ......................... CTAACTAAAACACAACTAAATATAACACTATATAACACA 860799 25 100.0 38 ......................... ATACTCTGTTCCTTGCTCCATCTTTAGTAATTTGCTAA 860862 25 100.0 35 ......................... ACCTTACTTTCTCTTCTCCCTTTAGATTAAGTTTT 860922 25 100.0 40 ......................... TATAAATAAGCGGTAAAAATGAAGAAAAAAACGTTTCTAT 860987 25 100.0 41 ......................... AGATATTATCCTTATATTCACCTACTTTTTGCAGATATTTC 861053 25 100.0 39 ......................... TAGAATATCAAGCAGATAAATTAGTAGTACAAGATGTGA 861117 25 100.0 37 ......................... TCTATTAATATTGTATGCAACATTATTTTAACTTTGC 861179 25 100.0 40 ......................... TAGACAGGTCAGTATAGGTCTTACCATCTAATAAAGCAAG 861244 25 100.0 42 ......................... AAATTACTATCTTGAATAGAGATATTAGCGTTGTCTATTGCT 861311 25 100.0 35 ......................... CTATATATGGGAAGGCTTATGATCACCTAGTAGAA 861371 25 100.0 40 ......................... GATGAATATGAAGAATTTGCTACTATAATAGTGAAACTCC 861436 25 100.0 39 ......................... CTCATCACCCCATGTTTCTTCAAATCCACCCAGATTCTC 861500 25 100.0 35 ......................... AAGAATCCCCAAGGATAAACACTAGCATATCGACC 861560 25 100.0 38 ......................... TTCCAAATACACGTTTATTCAATATGATATCCAGCAAC 861623 25 100.0 41 ......................... TTATTATTTACAGTTATTCTTATCTTTGCCATCCTCACCAC 861689 25 100.0 39 ......................... TCAAAATGAGTAATTTTTTCTTCATGCAACATAATTCAC 861753 25 100.0 38 ......................... TCTTTCACATACGTTTCTATACGCTTCTTCTTTCCATC 861816 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGACGATTACTAACCTAC 861881 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================= ================== 62 25 99.8 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGTCATCTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCTCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAAAAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGATCTCCAGAGGAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATATCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 882751-880518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJO01000001.1 Sulfolobus islandicus M.16.23 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 882750 24 100.0 36 ........................ TCTTCTATTTGATTGAATTTATAGCGGGATGATAGT 882690 24 100.0 40 ........................ TTATACCAGATGCACTAGGTGAGTACTCGGATGTTATTTA 882626 24 100.0 37 ........................ TTAATGTTTTTACTTGACCAGGTGTTAAACCAGCAGG 882565 24 100.0 39 ........................ TAACACATTACCTAATCCGCCGGTGAAGTAGCTTATGAT 882502 24 100.0 38 ........................ CGCATACCCCGTATTTACCTGCACTCCGCTTGATCCTA 882440 24 100.0 40 ........................ TGTATATTGTAATACCATATCAGGAAATCATCATACCAAA 882376 24 100.0 41 ........................ AGTACTTAGAGGGCAATAGGAAATATTGTCGTACACCGTGA 882311 24 100.0 40 ........................ GGTGGAGGTTTCGGTGTCTCTGGTGGTAGTAGTGCTTCAG 882247 24 100.0 41 ........................ CTAGCCTTCTTGAAATTATTAGCTTCCTTTCGAGCCTCTTC 882182 24 100.0 38 ........................ CCACTATCAACTTTGGCTTTCCTTCTACATTTACATTT 882120 24 100.0 38 ........................ TATATGATGTTCGACGGTATTCGTATTCTAGTTTTATT 882058 24 100.0 40 ........................ CTCCTCAAGCTGAAGAGACCAAAACAAATACTGGAAAGAG 881994 24 100.0 38 ........................ TGTTTACGATGTCAAGTATTAACCTTTCACATATCTGG 881932 24 100.0 40 ........................ CTTTAAGTGCATCATATATCATACTCTTTAATTTTGTCAT 881868 24 100.0 39 ........................ GTCTCAAACGTCATTAACACTACCATCCATATAACAGGT 881805 24 100.0 39 ........................ TCGTAATTAATTTAAGTACTGCACCTGTGGCAATTGACG 881742 24 100.0 38 ........................ CTCATACCATTAATCTTCCCCGGAAAGAAAAATTTAAC 881680 24 100.0 40 ........................ CTATCGAGAGAATCCTTATAAAAACTGACTATCTCTTTAT 881616 24 100.0 38 ........................ TTTACTGTCACAATTGATTGGGGAGATGGTACTTCAGA 881554 24 100.0 40 ........................ ATATCCATATATAGGTATAAATCCCCTGTTGACATCCAAT 881490 24 100.0 39 ........................ ACTTCGATTTCCTTTAGCTCTATTTCTGGTTCATCTCCA 881427 24 100.0 41 ........................ ATTGCAATATAGAGTACAGTTGACACTATAATAGTATTATG 881362 24 100.0 38 ........................ TTCCTCATAACTTCTCCCATAGATCCGCTTTTATCTAT 881300 24 100.0 39 ........................ ATGAATAGAACGTTTACGTTGGTAACGTTCGAGGAAAAT 881237 24 100.0 39 ........................ ATATCAAATAGTGTCATGAATAATTTTCTTTTGTATCTA 881174 24 100.0 40 ........................ CAAAATGGACAAATTCCACCCGGTTTATGAAAATTACTGA 881110 24 100.0 40 ........................ AAATATATTAATTTCCCATAAGGATTTTCATTAATTATTT 881046 24 100.0 38 ........................ TTTATTAATGCTGAAGGTTATTCAGTACCTTTAATAAA 880984 24 100.0 37 ........................ AAGACTAAGAACAAAATTCCGAGCCCTGTTAAGATTA 880923 24 100.0 42 ........................ TATATCTATTTAAATTTCCAGTACCATACGAAACTGCTTGTC 880857 24 100.0 38 ........................ CCAAAAAAGTAAAAGTTAGAACATTAAAATATGAAGCA 880795 24 100.0 38 ........................ TATCCCGTACGTCTGTACTCAAATTTTATTACCTTTCT 880733 24 100.0 41 ........................ AACGCATCATTCTGGTGGCCTCCACAGGGAAATCCTGGATA 880668 24 100.0 39 ........................ TGCCTTCCGCTTCTACTTGTGTGTAATCTTGATTTGATA 880605 24 100.0 40 ........................ AGATAAAAAAGCTGAGGTACGTATGCCCACACCCTGGCTT 880541 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 36 24 100.0 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATTAAAGCTAATAAACCCTCA # Right flank : TATACTAACTATTAATCATTGCTTAGTGCCGAAAGTATACTATAATGATGATTTTTGTAGCTTAGTGCTTACACTATCGAATTTCTTAGGTCTTAGGCTAGAAGAAGCAAAATAAAACTAAATTTTAGTTAAGTTAAAAGTTAGCTATATGTTTTGAGAAAAACTGAAGAATTCCAGCATGAGGGTGGGAAAAATTCTTATTTTTTATATTCCCACTTACATCTATGGATGTTAAAATTGCTGACTCAAAAGGGAGGGTTTATTTAGGTAAATGGTATGCTAATAAGAAAATTTATGTTGTGGATTTGGGCGGAGTTATGGTTTTAACTCCTAATACTGTTTTTGCTGAGGGATTAGAAAAGATGAGGAATGTAAAGGACTTAATGGAATTCCTTAAGTCGATATCGCCTAAGGAGTTAAAAGAGGCCTGTAGGGAAGCCGTATGGGAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 887348-892305 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJO01000001.1 Sulfolobus islandicus M.16.23 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 887348 24 100.0 39 ........................ CTAACGCAAACGGCGTTAAAACACTTGCTTTCAAAGAAT 887411 24 100.0 39 ........................ CATCCGTTAATGGTGGTTTAATCCAATATAAAACTCCAC 887474 24 100.0 38 ........................ ATTTTTAGCGGGTTATGTAGGAGGAGGGTTTAACATAA 887536 24 100.0 37 ........................ CACTTATACCTAGTACGGGTGGGAGTCAATGACAGAG 887597 24 100.0 38 ........................ CTATCACTGCGTCATAGGGTTGTATCGTTTGTTTTAGT 887659 24 100.0 40 ........................ ATCATAGTATCATTTAGAATAACAAAAACATTAACTATCT 887723 24 100.0 41 ........................ ACGCATACAGTTCATCCAATAACTACACAACACTCCTCTAT 887788 24 100.0 40 ........................ GTAAACACATGGCGGATATGTGATGCCATTGCTATCTTTT 887852 24 100.0 40 ........................ ATTACGATGATGATGACGAAGACGGCGAGGGCATAGTCCC 887916 24 100.0 37 ........................ TTTCTTGGTTCTTCAGGACTAGGACGTCGTAGTCCAG 887977 24 100.0 39 ........................ TGATGTTTTGATACGCTGTTTTAAAATCGGCTTTTTGTA 888040 24 100.0 41 ........................ TATAATTCTCCTCATCATCCGCCATTATTATAGGAAAGTTG 888105 24 100.0 40 ........................ AAGTTATCCTCGTTATTTAGTTTCTCAATGAAGTAGTACT 888169 24 100.0 38 ........................ TCATTCATCGATCCAGCATTGAAGAGAGAAGGACGTTT 888231 24 100.0 41 ........................ ATCTCCTATACTGACTTTAAACCCGCCGACTATTTTCTCTA 888296 24 100.0 39 ........................ GAATAGAACTATAGCAGAAATAACAGCTTGCACTCCGAA 888359 24 100.0 38 ........................ AATTTTATGACTACGCCACCCATACCTTTAGCACGTAA 888421 24 100.0 39 ........................ TTCTTGTAATGTCGTTATGTTACCATCATCTTTAATCTC 888484 24 100.0 40 ........................ ATATTTTTACTTCAAACATGAAGACCCATTATTACAACTT 888548 24 100.0 40 ........................ TTTAAGGAGATGGTTTTATGAAAATTGCAGATAAGGTCAA 888612 24 100.0 37 ........................ TATTTACACCGCCTTTCCCATTACCCTATCGCGGTTT 888673 24 100.0 37 ........................ CCATATCCAGGATTTCCCTGTGGAGGCCACCAGAATG 888734 24 100.0 38 ........................ TTGTAATAAATATTGGCTACCATTATGATACTCTACTA 888796 24 100.0 40 ........................ TGATTTCCACTTCTTGAAGTGTGTAGTTTGTTTGATATCA 888860 24 100.0 38 ........................ TACTTACACCCTTGTTTTAAGTATCTATTTTTGGGTTT 888922 24 100.0 34 ........................ GTGGGGGTGGGGAACCCCCGCGGGTTACTGAACT 888980 24 100.0 42 ........................ CGTGATAATTATAAATGGGCTGAGGCTATGGGTAATAAAGTT 889046 24 100.0 37 ........................ TTAAATGATCCAATAGGATTTGTAATTGTTGTAGAAC 889107 24 100.0 39 ........................ AACCTAAGGTTAAGGCTTCTACGTGCTGTTTTAGGTCAT 889170 24 100.0 38 ........................ AAGTAGGTACGTATAAGTCCGCATTCACACGTTTAACC 889232 24 100.0 40 ........................ TCAGTCGTTTCAACGGCTGTAAACATTGACTATTCAAATG 889296 24 100.0 40 ........................ ACTCCCACCTCGTCTCCACTACCACCCAACTGTATTCAAG 889360 24 100.0 44 ........................ GTGTACATCCATCATTGTCTTTTATTGAACAGATTATGTCATTA 889428 24 100.0 38 ........................ TCTAGTATAACTTTATACAAAAGCGGAACTGCAAATAT 889490 24 100.0 40 ........................ AATAGAATTTGTCCATTTACTGCGGAAATATTTGCTACTA 889554 24 100.0 38 ........................ AATTTCTCATGGCTAGGAGGCACAAGTCACATCATAAA 889616 24 100.0 39 ........................ CTCAGATTTCCATAATTGATCGAATGTTTGAAGGATGGG 889679 24 100.0 40 ........................ ATTGTTTTCTTATTTTCTTATCCATCATACTTTCTTCCCC 889743 24 100.0 39 ........................ GTAATAGATAATTCCTCGTTTCTATCGTTGAAAGGATCG 889806 24 100.0 38 ........................ ATAGCAATATGATGTACTATATTTAAATGAAAAACTGT 889868 24 100.0 39 ........................ TACTTTTTCTTCACCTTTGATATTTAATTTTACTATGAT 889931 24 100.0 41 ........................ GTTATTCTATTAAATGTGCATACTTCTTGATTTGCCGCCAT 889996 24 100.0 38 ........................ CTAGTGCCAGGGTTCAGGGGTGTACCCTCACTGCCACA 890058 24 100.0 39 ........................ TTTAGATTAAGTTTTACATAAATTATAGACACGATAACA 890121 24 100.0 38 ........................ ATCATCAGGCCCATGAGCGTTTTGCCGGTGCCGGTCGG 890183 24 100.0 43 ........................ AGGACGTAATTCTACAATTGTTCTAGTAACTCCTTGGGGCGGA 890250 24 100.0 40 ........................ ATAAAATTGAAGGGCATGGAACAAGACGTTATAGAGGAAT 890314 24 100.0 40 ........................ AAATGCGTATCAAGTTGCAGAGCAGAACAATATAAGTAGT 890378 24 100.0 39 ........................ ATCTTCAAAATATGCCTTAATTCGTCTTCGGACGTCGCA 890441 24 95.8 38 .........G.............. TCATAAGGTTTTACTGTTGCAGTAGGTGTTAAATTAGA 890503 24 100.0 38 ........................ TTCTAATAGCTGAACCCCTGCTTGATAGTCTCTATTAA 890565 24 100.0 39 ........................ AAACAAACTTCTCAACCATCAACAACACCACCTACATCG 890628 24 100.0 41 ........................ AACAACTGGATTTTTTGAATGATTGACACTTTTATGACTAT 890693 24 100.0 39 ........................ ATCGACATGTTGGGGACCTTTAGTATGGGCATATTTGAG 890756 24 100.0 43 ........................ TGGATCTGAGTTTTTAACGATTTTTCTTAGCAAACTGGGGAGT 890823 24 100.0 40 ........................ ATGTCGTTAAATGCATTTGATAGTAAATTTACCGCATTTT 890887 24 100.0 38 ........................ TATATGCCATCACTCACACCAGCATTAGCAGTAGCGGT 890949 24 100.0 39 ........................ ATAGAAGGGGCGAAAGGAAGAGCAATAAGTGCTATCATT 891012 24 100.0 39 ........................ GTTAATGACTAATTCTATAGATTTGGAGGAATATTGTAG 891075 24 100.0 40 ........................ AAAATATTGTTTGGTGTTGTATTTATTTGTGCCAAATTAG 891139 24 100.0 38 ........................ TATTTATACAGTAAAGTTTTGGCAAATTCCAATTGTAA 891201 24 100.0 40 ........................ TAGTATAATCCGCGTATTCACCGTTTATCACGTTTTCAAT 891265 24 100.0 43 ........................ ATTAATTCTTTCTTCTTTTGCTCATAATATTTTATTTCATCTT 891332 24 100.0 38 ........................ TATCGCTTAAGTAGGGTAAGAATTGATTAAGATAAGAA 891394 24 100.0 36 ........................ ATTTTATCGAGATATCATAATTACCATATGTTATAG 891454 24 100.0 38 ........................ CTAATTCCAATATATCCTATTTGTGACCAAGGGAATGG 891516 24 100.0 38 ........................ TATATCATGCGGTATAAATGCGGGGTCGGCTTCCTCGT 891578 24 100.0 39 ........................ TTTACGGGCACTTTCGGTCACCTTTTCGCTCACCCTCAT 891641 24 100.0 39 ........................ AGAGCCGAGATGATAATTAAACAAGCAAAACAATATCTA 891704 24 100.0 39 ........................ TTTGAATTTTTCTTGCGAAAAAGTATATCTGAACAGCTA 891767 24 100.0 40 ........................ TGGCAATCGTAATAATGCCCGTAACCGTAAGCTCTGAGAG 891831 24 100.0 40 ........................ TATATTATACGAAATACCATCATCTTTCGTGAATGTACCT 891895 24 100.0 41 ........................ AATAAATATATTATAGATCCTATCAGCATCGCCTTAGGAGT 891960 24 100.0 37 ........................ TTATTTTGCATCACCTCCTTCTAAGCCCTAAGACTAG 892021 24 100.0 42 ........................ TAGAAAAATTTATCAATAGCCTAGTAACACTGAAGTTTCCTT 892087 24 100.0 38 ........................ ATTCCAAAGTTACGTCATCGATGACCACGTAATGGAAA 892149 24 100.0 40 ........................ GAATAAGCGGGGCGAAGCCGACGTGTACGCCGTGTCTTTC 892213 24 100.0 45 ........................ TCTTATATAAAATCAAAATTGTATGAAATCCAAGCTGAAGTTTTT 892282 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================= ================== 79 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAAGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATGGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGAGCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //