Array 1 30194-30465 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOM01000034.1 Salmonella enterica subsp. enterica serovar Dublin strain SE853 853_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30194 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 30255 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 30316 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 30377 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 30438 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40692-42858 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOM01000034.1 Salmonella enterica subsp. enterica serovar Dublin strain SE853 853_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40692 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 40753 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 40814 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 40875 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 40936 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 40997 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 41058 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 41119 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 41181 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 41242 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 41303 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 41364 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 41425 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 41486 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 41547 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 41608 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 41669 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 41730 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 41792 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 41853 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 41914 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 41975 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 42036 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 42097 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 42158 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 42219 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 42280 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 42341 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 42402 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 42463 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 42524 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 42585 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 42646 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 42707 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 42768 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 42829 29 93.1 0 .............C.A............. | A [42856] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //