Array 1 1211914-1213793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKQ01000001.1 Aliarcobacter thereius LMG 24486 AA347_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1211914 36 100.0 30 .................................... TCTGTTCAAGATGCACTAAGATTAAAGAGT 1211980 36 100.0 30 .................................... ACTTTTGGTTTTATAATGCTTTTCACCTTT 1212046 36 100.0 30 .................................... TAGATGATGTGCGACAAGGTCAAGAGCTTA 1212112 36 100.0 30 .................................... ATGAAGATGATGGAACAGAAAAAGAATACG 1212178 36 100.0 30 .................................... ATACCTAGTTTATAACCCACCTAGAGACCA 1212244 36 100.0 30 .................................... ATTATATAATTCAACTCCAATTCCCCATCT 1212310 36 100.0 30 .................................... AGAGTTTTTAGAATTAGTTAGTACAGAAGA 1212376 36 100.0 30 .................................... ATGACTCATATATCCATTTTTTACAAAACT 1212442 36 100.0 30 .................................... AGAGCCTGTTCATAGTGGAGCAGATATTAA 1212508 36 100.0 30 .................................... CATTGTCGAGAGGGGAACAACCCAGACTAA 1212574 36 100.0 29 .................................... TTGGTTAAAAAAGGAATATTAGTAACTGT 1212639 36 100.0 30 .................................... CAGGAGCAGTTGAAATAATTACTTCAAGAA 1212705 36 100.0 29 .................................... TTGTTTATTTGTGAATTTCACGGCTAATT 1212770 36 100.0 29 .................................... TTACTATATAGGCGAACCAATAAGACCGA 1212835 36 100.0 30 .................................... TAGATGGAGAAATTATAAATCTTGAAAAAT 1212901 36 100.0 29 .................................... TCATAGTTATATTGGAAACCCGACTCGCT 1212966 36 100.0 30 .................................... ATAGACAATATCATCTTCGTACCTTGGATT 1213032 36 100.0 30 .................................... ATTATAAAATTGAAGATGTAGAGCAAATAA 1213098 36 100.0 30 .................................... AGAAACTAATCCTGAAAAATCAATCCATTT 1213164 36 100.0 30 .................................... CTGTTTGTAGTTCTATTGTATCATCAATCT 1213230 36 100.0 30 .................................... AGAGTTTTATCTTGATAATTCACTTATAGT 1213296 36 100.0 30 .................................... TGGTTGCCATCTAACTATGGATATGCTGAA 1213362 36 100.0 30 .................................... TTTATTCTTTAGCTCATATATTTCAAGTCA 1213428 36 100.0 30 .................................... GTACGAGTGCAGTTATAACAGCTTATATAC 1213494 36 100.0 30 .................................... ACTAAATGCAATGTATACAAGTGTAAAAAT 1213560 36 100.0 30 .................................... TAGGATATGAGTCAAATACTAGAATTATCA 1213626 36 100.0 29 .................................... GCTTCAATTTATTCAAATATTAAAAATTT 1213691 36 100.0 30 .................................... TAAGATGGATAAATTAACGGCAAAATCAAT 1213757 36 94.4 0 ...............................T...G | G [1213788] ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.8 30 ATTATATCAAATGGGGATTTGAGAGTAGATTAAAAC # Left flank : TCAACGAGTTCAAATATCATATTGCATGAAACAAATAGTTGCAAACTATCAAAGTATATGTTTGGGTAAAGTTGAAGATTTAAAGCTTTTTAGATTATGAAAAAGCAAAAAAAAGAAGAGATAAGTAGGTATAGAAAAATGGTACTCTTTGCAATGTTTGATATGCCAACAGATACAAAAGGTGATATTAAAAAATATACAAAATTTAGAAAAAAACTTCTAGAGATGGGGTTTATAATGTTTCAATTCTCTATTTATGTGAGATTTTGTAACAGTTTAGAAACAGCACAAAAATATGAGAGAAAAATCAAAGAAATTGCACCAACAAAAGGTTCAATAAGAGTATTAAAAGTAACAGAAGCACAATATAAAAATATGATTATTATAGAAAATTATCGCAAAAAACCTGAAAAAAAAGTAGAAAAACAGACTCAAACAGTGCTTATTTTTTAGTGTAAAAACTTTATAAAACCCTGTATTACAGGGTTTTTGCCTACTCT # Right flank : GAAGCTTTAGTTTCCTAAAGCCTCTTTAATAGCAAAAATTTCATTCATTGTTTTATAAAGTTGATCAATATGAAGCATATTTGGACCATCACTTTTTGCAACTTTTGGGTCAATATGCGTTTCAAAGAAAAATCCATCAACTCCAACACTAGCAGCCGCTCTTGCCATATATGGTACAAAAGAGCTATTTCCCCCAGTTGTTCCACCAGTGCTTGGAATTTGAACACTATGTGTTGCATCAAAAATCACAGGAGCATATTGTTTAAGAAGTAGTAAGTTTCTCATATCTACAACCAAAGCACCATATCCAAAAGTATTTCCTCTTTCACAAAGCCAAACACCAGCTTCTTTACTGCTTTCATAACTTACTTCATTTACTCCTCTTGTGTTTAATACTTTTTCAACAGGATGTTTCATAGCATCAGCTGCTAAAAATTGACCTTTTTTTATATTTATTTTTGCAGGAGTTTTAGCAGCAGCTACAAGTAAATCGGTTTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATATCAAATGGGGATTTGAGAGTAGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1242675-1245074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLKQ01000001.1 Aliarcobacter thereius LMG 24486 AA347_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 1242675 37 100.0 40 ..................................... TTTAAATAAACAGATTTTAACATTAACAGGGATATAGGAA 1242752 37 100.0 37 ..................................... ATCTATGCTATTATAACTAGCAAAGTTGCTTCTATCA 1242826 37 100.0 39 ..................................... AATATTCTGTTCCCAAAAAAGCCCCAACTATTACAGGTA 1242902 37 100.0 41 ..................................... GTTGGATTTTATTTAAAATATTAGGGTTGCACAAAGTACAA 1242980 37 100.0 103 ..................................... TTGAATCTTCATGATTCAACTCTTTGAGTTTAATGCCTGGCACTAAAATCACCCACTTTCATTAAGACTTGAATCTTCATGATTCAACTCTTTGAGACATAGG 1243120 37 100.0 36 ..................................... CTACATATAGGCTAAAAAACTTTTCGTTTGTATGTC 1243193 37 100.0 38 ..................................... TTTTTCCATGAATAAAATGGAAAACCATAACTGCTTTC 1243268 37 100.0 33 ..................................... TCTCTTTTTAGAGACCCTAAATTTTCTAAACCA 1243338 37 100.0 39 ..................................... TTTGAACACAGCCTGCAAACCGTTTGCTAGGTTTGCTCC 1243414 37 100.0 36 ..................................... AAAAGGAACAACCACAGAACAGTGGTTTCCTTTTAA 1243487 37 100.0 36 ..................................... ATGTCCCTTCGCTCTCAGGAGCTAATTTCCAATCAA 1243560 37 100.0 41 ..................................... ATTTCCCTCCACAATCTCAGAAGATATAGGGAAGCCAGAAA 1243638 37 100.0 36 ..................................... ACATCTGTTCCATAAAAGAAGTTTGCTTCTTTTACG 1243711 37 100.0 34 ..................................... AAGATATAAATCCTCTTTTATTTCTTTTAGTTCT 1243782 37 100.0 35 ..................................... TTCATCCAGCAGTTTTAAAAGAAGATATAAATCTT 1243854 37 100.0 34 ..................................... AAGAGAATAAATCCTCATCTTTAACACTTTTTGA 1243925 37 100.0 35 ..................................... AACTATGAAAAAGATAATGCGTAAGCTATTTGCTT 1243997 37 100.0 33 ..................................... TACTTTTATAGAATTTATCCTATGTTTTTGTGG 1244067 37 100.0 35 ..................................... GAAGAATCCTTTTTGATATGCAAGTTGTTGCATAC 1244139 37 100.0 39 ..................................... TTTGTATCAGGGGCAATGCAATCTGTTCTTCCCAATTCT 1244215 37 100.0 35 ..................................... ATGCTTAAATTAATTTTAGCTATTTGCTCTAATAC 1244287 37 100.0 38 ..................................... GTTCTGAACTTTGCCTCAAAAGTTTTTCTATCAAACTT 1244362 37 100.0 40 ..................................... TTTGCTCGTAAGCATCCTCGTTAATTATATTTGAGAAAAA 1244439 37 100.0 37 ..................................... TCAAATTTTTCTTCAAGCCTTATTGTCTCTTCTCTAG 1244513 37 100.0 43 ..................................... AATGTATCAAAAAAATTTTTTGATGTCGAAGATGCGTTAATAA 1244593 37 100.0 39 ..................................... TTCGTAGATTTCTACGACATACTGAGTATCATTTAGAAG 1244669 37 100.0 37 ..................................... GATAATAACCAAATTATATCTAACATTTCACAAACTG 1244743 37 100.0 39 ..................................... TTTAACTTTGGCTTGAAGCCAAATATCTCTTCCAACCAC 1244819 37 100.0 36 ..................................... TTGAAGCCAAATGTCGTTACCAACTATCATAAAGTT 1244892 37 100.0 36 ..................................... CATCCTCGTTGTTAGCATATGAGCCAAAGTTTATAT 1244965 37 100.0 36 ..................................... CTATTTCAAAAAGCTTATTATAGATTGTGTCTATAA 1245038 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================= ================== 32 37 100.0 39 ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Left flank : TTTACGACTATATCATCTTTGTGAGAGTTGTATTCCAAAATCTTTTGAGCTTTGTAATAGGGAGGAAATTTTTGAAAAAAAAGAGTATTTTATATAAAAAATAGTTTGCGAACTTTTTTTGACTGATTTAAGGGCTTTTAAGCTAAACTTCAAGATAAAAAGTTCGCAAACCTATGTTTTATAAAAGTTAATATATAGGTTTGCGAGCTTTTAGTTTTGTTTAAGATTTAAAATGCCATTTTATGGTACTTCTGAAACTTAAATAAAGCTAAAAAATAGAAAATCTCTATTTTTGAGTTTTTTATCTTTTGGTTTGCGAACTTTTTTTATAAGAAAAAGTCCATAAAATCGAGTTTTTTAACAATTTATTGTCAAAACACTAGAGTTGCTTTTTTAAAAATGGTATATATTTGCGAACTTTTTTGATACATTATGAGTATATAGTAATTTTAAGTAAAGATTAAATACTATTTTAGCTGTGAAAAATGGATTTAATGGCT # Right flank : CGCTTTTCGCGAAATAATCTGCAACCTTTAAGACTATTCAATAACAATGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATTACGAAAAGCTAAAGCTTATTCTATTTTTAGGACTCAGAAGAGGGGATTTATAGAAATGGAATTTTTATCAATACTTGCTTTGCAATATTTCCTTCTAAGCTATTCTATCAATAAAGCAGGTGGTGAAATTAAAATAAAGATTTGACTAAAGTCTAATTTCGAAACTAAGAATTAATTTTTTTCTTGAGGTAAAATTATATAAAATAAATTTAACGACAGTTTCTGTCAAAAAGATATATTAGAATTCTTCCAAATTAAAAGGGAGAAAAAATGAAAAAATCAATTATCTTATCACTCGTTTTAATAGGAAGTTCAAATCTATTATTTGCAAGTAATAAAGTATATAGTACTAATTTAGAGTATCACTATAATTATGGTAATAAAAAATGTTTAAAAACAGATTTC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATAACAATGACCCGATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //