Array 1 109616-108106 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFV01000010.1 Rubellimicrobium roseum strain YIM 48858 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 109615 29 100.0 32 ............................. TCTGCGGCGTTCGACGCGCTCCGCAAGCGGTA 109554 29 100.0 32 ............................. TAGATCATGCCCGAGATGTTGCCGCCCGAGGC 109493 29 100.0 32 ............................. CCGAATGGAATGTGCCGCTCGTTCAAGGACCG 109432 29 100.0 32 ............................. TTTGCCTACGAGGGCGAAGGGCAGGAGCGCGT 109371 29 100.0 32 ............................. GACATGGGCGCCAACAAGATGATGAAGGTCTA 109310 29 100.0 32 ............................. GACGCGGACGCCGCGCTGACCGATCGGATCAA 109249 29 100.0 32 ............................. GGAGAGCGCCCACCTCATTTGCCGCCCCTCCA 109188 29 100.0 32 ............................. GCCATCACGCAGTAGGTGGCGACGAGGGACAG 109127 29 100.0 32 ............................. ATGGGTATTCACATGCCCATCGGCGCACCGGT 109066 29 100.0 32 ............................. CCGAGGACGAGCGGGCCATGCGCGCGGCTGAC 109005 29 100.0 32 ............................. GCGGCCGGGAAGGTCCACGACACCTCGGCGGA 108944 29 100.0 32 ............................. CCGCTCGTCGTGGGTGACACGGCGCTGTTCGT 108883 29 100.0 32 ............................. CCACGCGCAGCCGGGGGAGTTGCCCTGCGCAG 108822 29 100.0 32 ............................. TAGGCGGGCGAGGCGGGCGCGGAGAAGTTGCC 108761 29 100.0 32 ............................. CCACGCGCAGCCGGGGGAGTTGCCCTGCGCAG 108700 29 100.0 32 ............................. TGGAACCGCGACCTGGTGCGCCTGGGCGGCGA 108639 29 100.0 32 ............................. CCGATCTTGCAGGCGTCCCCGATCATGTCGCG 108578 29 96.6 32 ............................T AACGACGTGTCCATGCCGGGGCTGCTGAGGCG 108517 29 100.0 32 ............................. TCGATGTCGTAGTCCAGCGAGACGCCGGCCGG 108456 29 100.0 32 ............................. GCCACGATCACCGTCGCGGGTGGCGCGTCCCT 108395 29 89.7 32 .................A.........TA TCCCCCGAATACGCGGCCATTGCCCGTGATCG 108334 29 93.1 32 ...........TC................ CCGTCCATCCAAACCGGCGCGTTCGCCCAGAA 108273 28 82.8 50 T.....T.....C.......C-....... ATCAGGGACGACTAGTACCGCTTGGTGGCCGCCAAAAAGAAAGCTAAGGC 108195 29 75.9 32 .......T....C..AGA..A...G.... AGCGGTGACGTTCTCGAGGGGCAGATCGAGGA 108134 29 75.9 0 TC..C...T...A..T........C.... | ========== ====== ====== ====== ============================= ================================================== ================== 25 29 96.6 33 CTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : CAGGGCTGCTCTCGAAGATCATCCCACGGATTGAGGAGGTGCTCTCCGCTGGCCAATTGCCGTGACCGGAGCCTCCACCCGAGGCGCTGGGCCTGGCCTTCAAGGAGGATGGCTCCGGCGATGATGGTCATCGTGGTTGAGAACGCCCCCCCGCGTCTACGAGGGCGGCTCGCAGCGTGGCTCCTGGAGGTGCGGGCAGGAGTCTATGTGGGCGACTATTCCACTCGCACACGTGAGCGGATCTGGCGCGAGGTCGAGTCCTGGATCGATGAGGGTGACGCGGTGCTGGTATGGAGAGCATCGACAGACCAAGGCTTCGACTTCGTCACTGTGGGGCACAACCGCCGCATGCCGGTCGACTTTGACGGGCTGAAGTTGGTGGCGTTCCACCCGCATAAAGGCTGAGAACTTCTCTCATCCCGAACTGTTCGGAGTCTGCTCCGGTCGGTAAGCTCTTTGACATTGAAAAAATACAGACAGGAAAACTGCTTCCAGTCAGA # Right flank : GCCCGCGCCGCCTTCCACCTATCCCAACCGGGCACTTACCGCGCGCGTGAGGACGATCACGTTTGTTGCCGAAATGCCTTAGGTACGCTTGCAAGTTCGTCTAGACGCTCTGCCCAGGCCTGCATCATGCGGGTTCGATCCTCCAAGTACTCGGCTGCGTTGTATGCGCGGCGCACCTTGTTGCTCTCAGCATGTGCGAGTTGCCGCTCGATCCAGTCGCGGTTCCAACCGAGTTCGTTGAGCATTGTCGAGGCGATGCGTCGGAAGCCGTGCACGGTCATCGTGCCCTGCGGGTAACCCAACCGCCGGAGCGCTGCGCTCATAGTGTTGTCGCTGATAGGGCGGTCTTCGGGCCTCAGGCTCGGCAGGATGTAGCGACGAGTGCCGGAGATCGGCCGCATCTGTTCTAAGATCTCGTGCACTTGCCTTGAAAGAGGCACCTTGTGGGGCCGAGGCATCTTCATGCGATCTGCAGGAATTGTGATAACCTGGTCTTCCCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //