Array 1 11176-12087 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGJ01000054.1 Schleiferilactobacillus malefermentans DSM 5705 = KCTC 3548 strain DSM 5705 Scaffold54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 11176 33 100.0 35 ................................. AGTAATTGACCCAACTGTTTGTACACCTGCTCCAA 11244 33 100.0 36 ................................. ATCTGTGTAACAGCTAGGATACCCAACGCATCTAGC 11313 33 100.0 36 ................................. CTGATGATACTGTTGTTTTAATGCCAGACGGTGCAA 11382 33 100.0 34 ................................. TAAAGACTTCCTCAACGTGATTGGTAAAGTCGGT 11449 33 100.0 34 ................................. ATGACAAACGAACCAGTTAATCCAGAAGTAGACC 11516 33 100.0 33 ................................. AATCAGTAACAACCTAATGAGTCAGTTGTACAA 11582 33 100.0 33 ................................. AATCCGTTTGGCAGGCTATTGATACAGCGGTGA 11648 33 100.0 33 ................................. AGGACAGGAAATGCTATTTCAGGAGTTGACGAC 11714 33 100.0 34 ................................. AAAAGTCATTCAAAAGTGTTAATGCTGTCACCAA 11781 33 100.0 36 ................................. TCATGAATCAGGCTGGAATCCTAAAGCTACCAACTC 11850 33 100.0 35 ................................. ACAACTTCCAACGACTGGAAATCAAGAAGGATATT 11918 33 100.0 34 ................................. AACTGATATGAATACTGTTTTAACTGATGGGTTT 11985 33 100.0 37 ................................. TTAGAAATTACAGATGTGTTCAATTGGCTTAATAATG 12055 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 100.0 35 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : TTCTCTACGGCACCGAATACGGTAGCAAATTATTTCCGTGTTATTGACTCAGAAACCACAAACGTTATCGTTCAATATAACACTGAAAGTATTCGTCTAGTTAGTGAGTTAATTTCAGAAAAAAGTAAATTTGAGAACATTTCAAAACTATTAAAGAAGGCTCAACCATATTGTGTTTCAGTATTTGGTGATCCAAATAATTCTAGAAGTGCGCTTGGTCAATTGCTGAGTACAGGCGATGTGCAATTTTATCCAGAGCAGGGTATATATGTAGCAGCTGATAACGCCTACAGTAAAGATTTAGGATTAGTGGGAACTGGAAATTTTGATTATTTAGACTATTAGTGCGAATACGAAGTACACATACTTTCTTTGGCTAATTCGCACCATAAAATTCAATAATTTTGATCAATTTTCTTAAAAGCTACTCTTTGTTTCATATGTTTCTGTACCGCCGCATATATGTAGTGTTTTATAGACGTATAGCACTATATATTGCG # Right flank : ATATAATCCATCACTTGCTAGATGAATTATACGGTCGCACCTTGTATGAGGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9936-9021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGJ01000058.1 Schleiferilactobacillus malefermentans DSM 5705 = KCTC 3548 strain DSM 5705 Scaffold58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 9935 33 100.0 34 ................................. AAAGTATTTGATACCGTTGGGGTTTACCATTTCT 9868 33 100.0 36 ................................. AATATCAAATTCAGCAACTGAACTATGACCCGGCGT 9799 33 100.0 34 ................................. AAAGTATTTGATACCGTTGGGGTTTACCATTTCT 9732 33 100.0 35 ................................. GACCACTTCTTCTTAAACGATACGACCGCATTCCC 9664 33 97.0 36 ..T.............................. AATATCAAATTCAGCAACTGAACTATGACCCGGCGT 9595 33 100.0 35 ................................. GGTAATTTATTCATCAAGTTATTGCTTTTATCTAC 9527 33 100.0 35 ................................. TAGATTAATTGATATAGTAATTGGATTACCTGAAT 9459 33 100.0 36 ................................. ATCAAGTAATTAAGCAACAAAAAACTAACCCTATCA 9390 33 100.0 34 ................................. GCAAAACCTTAGCCCAGAAAACGGCTGGCGGCGG 9323 33 100.0 34 ................................. GTGTCACCTGTGTACTTACTGTCACCGCTAAACT 9256 33 100.0 34 ................................. CTACTGCCTGCGTTAGGGTTGCTGCCGTATAACC 9189 33 100.0 34 ................................. CTGACTAGTTCCACTCAATTCTGGAATCGCCCGT 9122 33 100.0 35 ................................. ATCTTGTGGTCTTGCATATCTTGAGTTGCATTGGA 9054 33 100.0 0 ................................. | T [9040] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.8 35 GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Left flank : TATGAGGTGCGTGAATTGAAATCCAATTACCAACAACTGGAAATCAGGAAGGGTAC # Right flank : AATTCAATTCGGTAAGTTGAATGCGGCTTAAAATTGTCACACTCTGTATGATAACTGCACTTGCATATTCAAATATATATATCACACTCTAATCTAAATCAGTATAATTCATCAAAGACTATTCCTACTGGTTTATATATTCTTGGCATATCGTAATGAAAACGTTTACACCGATGCATCTACTTGCTACTATTGAACTAACTACTAAGACAGTGAGATGATTCTCAATGGAATATAATGAAGACGATTTTCTAATGATTTCGGGAATCCAACATTTTCGTTTTTGCTCCCGCCAATGGGCTCTTATTCATATTGAGCAGGCGTGGAAGGATAACTTACTGACTTTTGATGGTCAAACTTTGCATACAAAAGCTGATCAACCACAAATTCGTGAAAAAAGAAAAGATAAGCTAATTGTTAGATCTCTTCCAGTTCATTCTAGGGAACTTGGACTTACTGGTATTTGTGATGTTGTTGAGTTCACAGAATCAAAATCTGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATGAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //