Array 1 220662-216970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYV010000007.1 Salmonella enterica subsp. enterica serovar Muenster strain S69 NODE_7_length_237205_cov_407.384240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 220661 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 220600 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 220539 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 220478 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 220417 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 220356 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 220295 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 220234 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 220173 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 220112 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 220050 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 219989 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 219928 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 219867 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 219806 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 219745 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 219684 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 219623 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 219562 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 219501 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 219440 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 219379 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 219317 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 219256 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 219195 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 219134 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 219073 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 219012 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 218951 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 218890 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 218829 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 218768 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 218707 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 218645 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 218584 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 218523 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 218462 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 218401 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 218340 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 218279 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 218218 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 218157 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 218096 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 218035 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 217974 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 217913 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 217852 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 217790 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 217729 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 217668 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 217607 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 217546 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 217485 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 217424 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 217363 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 217302 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 217241 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 217180 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 217119 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 217058 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216997 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1846-171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYV010000009.1 Salmonella enterica subsp. enterica serovar Muenster strain S69 NODE_9_length_194438_cov_427.708836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1845 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 1784 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1723 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1662 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1601 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1540 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1479 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1418 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1357 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1296 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1235 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1174 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1113 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1052 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 991 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 930 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 869 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 808 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 747 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 686 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 625 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 564 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 503 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 442 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 381 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 320 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 259 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 198 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCACCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //