Array 1 422701-424482 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXK01000003.1 [Clostridium] symbiosum strain NCTC13233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 422701 31 100.0 36 ............................... ATGTTGTGACGCAAACGAAAAAGCTGTGCTTCATTC 422768 31 100.0 36 ............................... ATAAATTACTCCAAGTACCGGAGTTATAGAAGTATA 422835 31 100.0 38 ............................... ATATTTCTCGTGTGTCGTATGTGCTGGAGCCTTTTATC 422904 31 100.0 37 ............................... ATTCCAGTGTCTCGGTCCGTACAACAGTGGTACATCC 422972 31 100.0 36 ............................... ATTACCTGCTTGCCCATCTTGCGGCTCTGGCGCGTC 423039 31 100.0 36 ............................... ATATAGCGCATCTGCTTATGTTTGTGTCCAGATGGA 423106 31 100.0 37 ............................... ATCAAAAGAGCCGTAAATATACGGTTTTCATTTTACC 423174 31 100.0 38 ............................... ATCCTTTATCCGGCTGAAACGCTGTTTCCGGACCCGGA 423243 31 100.0 35 ............................... ATATTTTCTCCTCCAAGGTCTTTCAGCTTTCTTGT 423309 31 100.0 35 ............................... ATTGATAAAAGATAGCTCATTCTATGTGGATTCTC 423375 31 100.0 35 ............................... ATTCCCCTGGGAACCGTACAACGGCCAGCAGCTTG 423441 31 100.0 38 ............................... ATATATGTCGTTCGCATATCAATTCCGGCCCCGAGAAG 423510 31 100.0 35 ............................... ATAATTCGGTCACATAATCCCCAACATTTCCAGAT 423576 31 100.0 36 ............................... ATCAACTGTACGTGCATCCAAGATATCGTATTCGAT 423643 31 100.0 36 ............................... ATCAAGCAAATCAATCAGAAGAACCATGTCATAGTG 423710 31 100.0 36 ............................... ATGAAACATTAAATTCAAACAACAACCAAGGTCAAT 423777 31 100.0 36 ............................... ATAGTCATTACATAATAAGGAAATTGAAGGGAAGAC 423844 31 100.0 36 ............................... ATAGGTTGAGAGTACGCAAGATGCGAAAGAGCTTCT 423911 31 100.0 38 ............................... ATTTTGCTGCTATACTTTTTTTGCCAGCGCGTGACACA 423980 31 100.0 36 ............................... ATTATGCAAAACCCGTTATCATCTACGCTATCAACG 424047 31 100.0 37 ............................... ATCACTATGTCGGCGCCACCGGCGGAGCGGAGGCCAA 424115 31 100.0 35 ............................... ATCTACCACAGTCCAGGACTATCAATGCATCAAAC 424181 31 100.0 36 ............................... ATATATCACCGATGGATTAAGCTTCAGGATGACAAC 424248 31 96.8 37 .......T....................... ATCAAGAGCCTCCGCAACCTTTTCAAGTTCTGATATT 424316 31 100.0 38 ............................... ATATCTGTGTCGTAAGATTCATATAAAATATTCGTAGC 424385 31 100.0 36 ............................... ATTAAAGTGTCTAATCTAGGGCTTGTTCGTCCACAA 424452 31 93.5 0 ...........................TT.. | ========== ====== ====== ====== =============================== ====================================== ================== 27 31 99.6 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTACATTTTTGCT # Right flank : AATTTTATAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAAGTAGAACATACATTTCCCAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCCTTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1541926-1548302 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXK01000003.1 [Clostridium] symbiosum strain NCTC13233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 1541926 32 100.0 33 ................................ GATATGGATTCCCGGCAGCCCCACTACATCGGC 1541991 32 100.0 32 ................................ GTCCCGTAATCAGATGGACAACAGCAATCAAT 1542055 32 100.0 32 ................................ ATCATTCAGATACAGCATTTCCTGCAGCTGGC 1542119 32 100.0 33 ................................ TTCCCCGGAGGCAGCCGCCAGATACATGATGCC 1542184 32 100.0 33 ................................ CGGCCAGGCCAGCAGAAGCAGCCGCGGCCCCTT 1542249 32 100.0 33 ................................ CGCATACCCCTTTAGCCGTTTCTCCTGACCGTC 1542314 32 100.0 35 ................................ GATGGTATAGCCAAAAGAACCAGCCACCGGAGCCA 1542381 32 100.0 34 ................................ GTCAAACAGCCCCATCTCCGATATTTCCTTACCC 1542447 32 100.0 33 ................................ GTCCTGAATCACTGCCTTCATCCTTTTTTCACA 1542512 32 100.0 34 ................................ CTTAAATGTCAATTTAACGGATTAAATGGTTCGT 1542578 32 100.0 33 ................................ CTTCTAGGTTTGATATAGTTATCTTCATCCGAC 1542643 32 100.0 34 ................................ AGTCATAGAGTCATTGACAGTAGCCGCCAGGGCG 1542709 32 100.0 34 ................................ CCCTTTGGAAAGGCACCTGTCGTGAGATGGGTGC 1542775 32 100.0 34 ................................ ATAACTTAAGTAATCAGCCGTATAGAGTGCTTTT 1542841 32 100.0 35 ................................ CGTGTTCAAACGAAAAGGTATCCCATAACCAGTCT 1542908 32 100.0 33 ................................ AGTTGGGTGCTGCAAGGTATCAATTTTCCCGGC 1542973 32 100.0 36 ................................ GGAATAGGCAGCCAGAATTTCTCTTGCCTGCTGCCA 1543041 32 100.0 33 ................................ TTGCTTTAACTCTGCGTCCAGTTCTTTGTTCCC 1543106 32 100.0 34 ................................ GATCACGCCATAGTCTACTGTCATATCGCCACAG 1543172 32 100.0 34 ................................ TGTCCGCCTTCGCTAGCCATTAGCCCTAGGAATG 1543238 32 100.0 35 ................................ TGGATTGTATTGGACGCATGTGTAGTACCGGTATG 1543305 32 100.0 34 ................................ CATGATGTAATTGAAAATCTCCATTTGGGATTCC 1543371 32 100.0 34 ................................ GATTTCCGACATTGTAGTAGCGTGGCTGGTTTTA 1543437 32 100.0 33 ................................ TATGCGTGCTTGTCTACCTTTAACTGCTTGTAC 1543502 32 100.0 34 ................................ TTCCGGTTCCGCAGTTCTTTCTATCGTCTTCTCT 1543568 32 100.0 34 ................................ ATCCGGGAGGCGCGTTCCAGAGGCAGTATGGAAC 1543634 32 100.0 34 ................................ CATAATCGTTTTTAAATGCGCCAAACGGCTGGAC 1543700 32 100.0 36 ................................ AGCATCCATACCAAAGCGTGCGCATAAACCAGTAAT 1543768 32 100.0 34 ................................ AATTATTCTGAAATGACCGAAGCCCTGCGTGACT 1543834 32 100.0 34 ................................ ATCCCAGACTGCTTTTAAGCCATCCCAGAGTTTA 1543900 32 100.0 35 ................................ AGGTCTACGCCAATGCCGGCGCCGGGACCTACGAG 1543967 32 100.0 35 ................................ CCACTCCCGGAAAAGGTTAATCCAATCATCCAGGC 1544034 32 100.0 34 ................................ CATCTGTGCTTCCAGTCGATTCCGTTCCGCAATC 1544100 32 100.0 34 ................................ CATATGTTCCTCCTAAATCGCAGGGAGAATCAGA 1544166 32 100.0 34 ................................ CATGCATTCATCGGAGTGATCCAGAATCTCCACA 1544232 32 100.0 33 ................................ TTTCGCTGCTTCCGAAACATCTTTCATGGTCAG 1544297 32 100.0 35 ................................ ATTACACCCCATTTACTAATCAGCTGTCGAAGCAT 1544364 32 100.0 35 ................................ ATAACGTTCCAGATGCCAGCTTCTGGCACCCCGGA 1544431 32 100.0 33 ................................ CTTCCTGCTACTTAAATACTTTGGCTTCTTTTA 1544496 32 100.0 34 ................................ TTTCTATTTTCGTTTATGTTTATGTCTTTTAATG 1544562 32 100.0 32 ................................ CTTAATCCACAAATTTATTTCGGCCACGCTTG 1544626 32 100.0 35 ................................ CGGAGGCGGAGCGTCAGTAGCGGCGGCCGGTATGG 1544693 32 100.0 34 ................................ CGTCAATAGCTGTGTGTAATGAATTGGCGCCTTA 1544759 32 100.0 34 ................................ GTCAAAAAACAGGTACTTGATTGCTTTGGATGCC 1544825 32 100.0 35 ................................ ACTGATTTTATGTTCTGCCGTTACCTGGCCCGCAT 1544892 32 100.0 35 ................................ CCGGCCTATCAGGGATAGAAAGACAGGGAAGCGAT 1544959 32 100.0 33 ................................ ATAGACACCATCAAAGCTACCGTTTTACAGGTC 1545024 32 100.0 34 ................................ TTCCTTCTCTCCTGGTCCACCTGTTATCATAGCC 1545090 32 100.0 33 ................................ TCCAGAGCCATTGTGGAATCCAGCTGGAATAGT 1545155 32 100.0 35 ................................ TTAGGGGAAAGACAGTGCAGGAATCTATCCGCGAG 1545222 32 100.0 33 ................................ ATTAGGTAAATCATATCTTCCGACATTAGCTGG 1545287 32 100.0 34 ................................ AATGAAGCTCTGTTTGATTTCGTATCCAAAATAC 1545353 32 100.0 34 ................................ GCATTGTTAGTTGCATAAATGAAGTTGTAAGGAT 1545419 32 100.0 34 ................................ AACTGCCTTTATAGCCTCCTGCGGTATCTGCCCG 1545485 32 100.0 34 ................................ GCCGTTCAAACAACTTCGTTACCGGGTTGAATTT 1545551 32 100.0 35 ................................ CCTTTGTGGTGTACCTATACCCCGGAACCAACAAT 1545618 32 100.0 34 ................................ ATCTCTGACATGTTCGATAACCGGCAAATGACCG 1545684 32 100.0 34 ................................ GTCACCGTCAAATTCAAAAAGGAGGGCGAAGGCT 1545750 32 100.0 33 ................................ GATTACCAGATACACCACGTCTGAAAAAGAACG 1545815 32 100.0 43 ................................ AAGTGTATCTAGTCTTGGGAATGTGCCATTGCAAATGTCTGAA 1545890 32 100.0 35 ................................ ATCCGGAATCGAACCGGAACCCATGGCGCGACCCT 1545957 32 100.0 34 ................................ TACCTGCCGTTCGGCATCTTTAAGGGCATTCAGC 1546023 32 100.0 35 ................................ GGACGTGGTAGACGAAATGAAGGCCGAAGCAAAGG 1546090 32 100.0 34 ................................ GCGAAGTATTCGATATCAGCAAGGCAGTTTGTTC 1546156 32 100.0 33 ................................ AGTCTTATCCCATGTATCTTTATCTTCTATAAT 1546221 32 100.0 34 ................................ CCTTGTATAGAAGTGCGTCAGTATCTTTGTTTCA 1546287 32 100.0 34 ................................ AGGGAAGACACAAAGTTTTTAAGAGGTGATGGCT 1546353 32 100.0 35 ................................ ATGGTTAAGGTTAGATGCACAGCATGTGTAGGACG 1546420 32 100.0 35 ................................ GTTTTGGCCTTAATGCGGCCATCCGGAAGAGGAGT 1546487 32 100.0 35 ................................ CTTTAAATCTTCATACAAAATTTTTATTCTTCGAA 1546554 32 100.0 35 ................................ AGTTAAGCGAATAGGAGAAAGTTTTGGAACGAAGC 1546621 32 100.0 35 ................................ ATCAATAATTAACATATCAATATTCAGAAAAGTTT 1546688 32 100.0 34 ................................ GGCGGATGTAAAGAAGCGTTCGCGGTATTTCTGC 1546754 32 100.0 33 ................................ CGCATTCCCGGCCATCATGGATCAGACCATCCG 1546819 32 100.0 35 ................................ CTAAGTTACAATTGCGAATTCTTCCGCATATAAAG 1546886 32 100.0 34 ................................ AATTAATCCAACATATAAGTCAACTGAATTTTCT 1546952 32 100.0 33 ................................ CCCGTCAATCCCGGAGAAGACCATCCAAGAGCC 1547017 32 100.0 35 ................................ CGCGAACAGCAATGCTTAGCTGCGTATAGCCAACC 1547084 32 100.0 34 ................................ CGTTTCCCGGATTATGAACAAACTCTATCCCCAC 1547150 32 100.0 33 ................................ GGTTCTGCGAGCCTTTAAACGGAATGTTATCGG 1547215 32 100.0 34 ................................ CTGGGCATACTTATCGGGTATCCGCAGCAAAGCC 1547281 32 100.0 33 ................................ TTTGGTCAGGACTATGGCCGACTGCACAGTGGC 1547346 32 100.0 36 ................................ CTAGTTGCTTCAGGAAAGCAGCGTCGTCATCGCCTA 1547414 32 100.0 33 ................................ TGATTCTTCCCGGCATACGGATTGTGAATATAT 1547479 32 100.0 34 ................................ ATACTACTATATGTTCCAAATTGGTCGAGTTGTA 1547545 32 100.0 35 ................................ CTAGCCGGTCTTGCACCGGAAACAGCCCTGGGGCG 1547612 32 100.0 33 ................................ TGTAGTGGGTTTCATTCCCTGCAGCAACATATT 1547677 32 100.0 35 ................................ AGCCAGGAAGAGGCAGAACAGGCAATGACAGCGTT 1547744 32 100.0 33 ................................ TGCAGTGGAAGTTTCTGGACGCCGCAACCTGGT 1547809 32 100.0 34 ................................ CTGTTTGACAGGTCAATGCTATCCCGGTTAAGCT 1547875 32 100.0 34 ................................ ATTTTCTTCATAAATAACTTCATTTCGTAATATG 1547941 32 100.0 33 ................................ TTGGCTTTGTAATGTATAGGAAAGTGATTCAAG 1548006 32 100.0 35 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAGG 1548073 32 100.0 34 ................................ GTCAATCAATTCCCCATCCAGTGAAGCATGCATC 1548139 32 100.0 34 ................................ CATCAGGTTCTTCGGCTTCTCCCTGATGGCGTAG 1548205 32 100.0 34 ................................ ACGTACAAGGGGCCGTTGACAAGTTTAATCAGAT 1548271 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ =========================================== ================== 97 32 99.9 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTTGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGGATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGCGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAATACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGTCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCAGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //