Array 1 5668-5339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000103.1 Acinetobacter baumannii 99063 ab99063.contig.102_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5667 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [5656] 5606 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 5546 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 5486 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 5426 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 5366 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : TATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTACC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000112.1 Acinetobacter baumannii 99063 ab99063.contig.111_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 40 30 96.7 30 .............................G ATGTTGAATTGTATAACATGGATGCGTTTA 100 30 100.0 30 .............................. TTTGGAATTCGTTTATGCAATTCGCGCATT 160 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 220 30 93.3 30 ............................TT CGGCACCACCCAGAGTAACTTTACCTTTAG 280 30 100.0 30 .............................. AGGAAGTTAAGGACATTGAACAGGCAATGG 340 30 96.7 30 ............................T. AAGGCGATCCACCTCCCGTCACAGTCATTT 400 30 86.7 30 ...........T.C..............TT TGCTAAAAGGATTTATGCTTTAAAATACTT 460 30 83.3 30 .......A.....C...T..........GT TGGCGTACGGATAACGGAAGAAAGCATAAG 520 30 90.0 30 .......A.........T...........A ATAACCACGGTTGTGGTAAGTCACTTTTAC 580 30 83.3 0 .......A.A.....T.T..........G. | ========== ====== ====== ====== ============================== ============================== ================== 10 30 92.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAC # Left flank : TTAGAAAAGCAAATGGCAACCAACTACCTGCTTCATCATG # Right flank : CGTTCAGGTTGAGGAGATGAAGTGATGTGATGTTTATGACGGTTTACGTCACTTAAGCGTTAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTATCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 429-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000035.1 Acinetobacter baumannii 99063 ab99063.contig.34_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 428 30 96.7 30 .............................A AGTAAATAATAAAGGGTATTGATACCAGAA 368 30 96.7 30 ............................A. ACATCTTTATCAGTATGACGAACCTTAGAC 308 30 100.0 31 .............................. TGGCTGCAAGCGGGACCATAATCCATGCAGC 247 30 100.0 30 .............................. TCTGGGAGATTTTGAGAGAGGGCACACTGC 187 30 100.0 30 .............................. CAGGACATTGATCAGGTACTGATTTGATAA 127 30 96.7 30 ............................A. TATCGCTTTCATTTTAAAGACGAATATCAA 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATT # Right flank : TCATGAACTAATTTAAAAGCAACATTAGTAAGTTCATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39-726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000387.1 Acinetobacter baumannii 99063 ab99063.contig.386_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 39 30 100.0 30 .............................. CCCAAAGAAAAACGGGTAATCAAACGGGTA 99 30 96.7 30 ............................A. TTTGGAGAACTCCGCAGAAAACAAACTCTA 159 30 96.7 30 .............................C CGCTTGTCTGTCTCTAACTTCCTGCGCTAT 219 30 93.3 30 ............................AG ACTGAAATTGTTGTGAAGCGTTACCAACGT 279 30 100.0 30 .............................. AACGTTCAAAAGCTAAAACAACAGCTGAAG 339 30 100.0 30 .............................. CAAACACAGCTTTAGCAGCAACAGAGTTAC 399 30 93.3 30 ............................GT TGGCAGTAAATCGCATGACATTGCGTTATG 459 30 93.3 30 ............................AG CAAATGGCAACCAACTACCTGCTTCATCAT 519 30 93.3 30 ............................AG ATGTTGAATTGTATAACATGGATGCGTTTA 579 30 93.3 30 ............................AC TTTGGAATTCGTTTATGCAATTCGCGCATT 639 30 96.7 30 .............................T TAACTTTCAGGTCTGCCAACTCTGCTTTTC 699 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ============================== ================== 12 30 95.8 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : TAGAAATTCTTGAGCCATTGTGCGGCTACCTTGTCGCAG # Right flank : T # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000423.1 Acinetobacter baumannii 99063 ab99063.contig.422_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1 30 100.0 30 .............................. TACCCGATGCAGGCTGACCGCCAGTAATGA 61 30 100.0 30 .............................. TCTTAGCAAATAAACTTGCGTAAGTTCCGT 121 30 93.3 30 ............................AG TAAAGAACAACTTTCTTTAGAGTTGCCTAT 181 30 100.0 30 .............................. AACTGAACTTTGCTATCAAAAAGTTTTAGT 241 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 301 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 361 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 421 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 481 30 93.3 30 ............................CG CAAGGGGCTTTTTAGTGCCTAGCTGCTCGA 541 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ============================== ================== 10 30 97.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : CGCTTGTC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 550-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXJ01000417.1 Acinetobacter baumannii 99063 ab99063.contig.416_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 549 30 100.0 30 .............................. TAACTTTCAGGTCTGCCAACTCTGCTTTTC 489 30 96.7 30 .............................A ACCCGATTAATCCCTATGACTGGCGAAAGA 429 30 93.3 30 ............................AG TACGCAAAGCTTTAAATCATGGTTTGGTAA 369 30 100.0 30 .............................. AATACTTCAATTGCACCGAAAGCTTTTTCA 309 30 93.3 30 ............................AC TAAGCGTTCCATCTCGTACCGCAACTTAGC 249 30 93.3 30 ............................AG ACGAAGGACATTTAGTCGGAGGATCAGGAA 189 30 96.7 31 .............................G AAAGAAGGTCCTGACAAGTTAGAAAATGAGA 128 30 96.7 30 ............................G. GCCTGTAGCAAAAGCAAAAGATTTAGCATT 68 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== =============================== ================== 9 30 96.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TTAGAAATTAACTGAACTTTGCTATCAAAAAGTTTTAG # Right flank : TAGCAGTAACCAAAAAAAACCGTTCAGGGGAAGTTCATG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //