Array 1 19695-21171 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXO01000054.1 Clostridium liquoris strain DSM 100320 CLLI_contig000054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19695 30 100.0 36 .............................. AGTGAGGTGATGAACTAATGGATTTACTTGGCAAAC 19761 30 100.0 35 .............................. TTTGCCTATTTCATTATATCTGCTGCCACTTGTAA 19826 30 100.0 36 .............................. CCCCAGAGGAAAACGAAGAAAACTTTAGAAAAACTC 19892 30 100.0 36 .............................. CCGGACTGTACGCTCTCCCGTCTTCTATCATTTCAT 19958 30 100.0 35 .............................. TTAGTCCTATTAATTGTAAATGCTGTTAAGAAAAA 20023 30 100.0 36 .............................. AATAATTTCTAATGCAAATGTTGTATTACAAGCTAA 20089 30 100.0 36 .............................. CAATTCAAGAAACTTAGTATTATTAAAAACTGGTTA 20155 30 100.0 36 .............................. CAATTCAAGAAACTTAGTATTATTAAAAACTGGTTA 20221 30 100.0 36 .............................. AGTTAGAAAAGAGGAAGCTGCTCAAGAAAAAGCTAG 20287 30 100.0 37 .............................. TCTACGTAACCTAAATGGATCAATGAACCCTTACACT 20354 30 100.0 36 .............................. CTACATACATTACCTGCTGTAGATACAAAATAACTT 20420 30 100.0 36 .............................. TTTTCAATATTTTGTATCCTTGGTGCTAATTCTAAT 20486 30 100.0 35 .............................. GATAAAAACAAGGTCGAAAAAATTGAACAGGAAAG 20551 30 100.0 36 .............................. TAAGCAATATGACCTTTATATTCTTGATACTGAAAT 20617 30 100.0 36 .............................. TTTTTAGTGCTATTTTTTAATTCTTTTAACATTTTT 20683 30 100.0 36 .............................. TGATAAAAGTAATAGCTTACTAACATGGTCAGCATG 20749 30 100.0 36 .............................. TTTGCTAAGTTGTTAGTTTCATTAACTTTCTGCTGC 20815 30 100.0 36 .............................. ACAATAGCCTGCTTCTGTACTTCTGGCATAGTCTCT 20881 30 100.0 35 .............................. ATAATTTATACACTCTCCTTTAATCTCTTTTTACT 20946 30 100.0 36 .............................. TGCCATAATCCTTGGCTATTTGAGTGATGGTAACAA 21012 30 100.0 35 .............................. AAAATAAAAGTGTGATTGGATCCTTTCCTATGTTA 21077 30 100.0 35 .............................. GTAAGTGGGAGAATAACCGTCCCAAAAGCATTTCT 21142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 36 GTTGAAGCTTAACATAGGATGTATTTAAAT # Left flank : TTAAACCTTTTAGTATAAAGGAGAAAATATAATGAGTGAAAAAATAAATTATAATTATGCATTCTTGTTTTATGATGTAAATGAGAAGAGGGTTAATAGAGTATTTAAAGTATGTAAAAAGTATCTGACGCATTATCAAAAGTCCGTATTTAGAGGAGAAATAACCCCATCAAATATGATAAAATTAAAAAAAGATTTAAACAAAGTTATAGACAAAACAGAGGATTTTATATGTATAATAAAGCTTTTGAATGATAAGGTTTTTGGAGAAGAAATATTAGGTGTAACTGGATCTACTGAGGAGGATTTAATATTATAGAAAGCATCCCAACTGATTTTAATCTAAAAATCAATTGTAAGCCAGTAAAATCAATGGCTATATCATGATTTTAGATGATACACTTTTAATATACTAAACGGTTGGGATAAATTTTAATAAATCCTTTAAATTCAATGGGTTTAGTACTATAATAAAAATAAGGAATGCCTATTTTACAGTT # Right flank : TCTGCACCCCTCATAAGGGTTAATATTTTTGTTTGCCGAAATTCCACCCTTTTAGTTTATCATTAACAATAATCTGCATAAGGATAATCAAGCTGTGAATTTGAAGTTCCTATTAAGTGAAACTTACGTTAGATGAGTTATTTATTTCATCTAAATTTTAGTCGAACTAATTTAGGAGCTTTTTTTTATTACGCTAAAATGAATAAATAGTAAAATAATGCTAACAATATCATTGGCTATAATTAAAAGTATTATAGTTATTAAAGGGGCTGATCGTTATATCCTATGATAAAATAATTAAAAATTTAATAGCCATCAATTTAGTTTTATTGGCAATAATTTTTATTGGTAAAATGTATTTTATTCATAAGTTTATAAGAATAATTTTTAGAGCCTTCTTAGTACCATTAATTATATCTGTGTTTTTTTATTACATTATGAAACCATTAAATAATATCTTCTTAAAAAATGGATTAAAACCTAGTATATCTGCTGTATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 72459-71845 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXO01000012.1 Clostridium liquoris strain DSM 100320 CLLI_contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 72458 37 100.0 36 ..................................... CCTAAGCCCTTGATATATCTAGCTTGCGAGGTGTTA 72385 37 100.0 36 ..................................... GTTCAAAAGTACAAAAGAAAACCTCCTCAAAATTAT 72312 37 100.0 35 ..................................... AAGTTATTAAACAGGGGTGATTAATCGTGGATAAA 72240 37 100.0 35 ..................................... TAGAGAGGAGATTAAACATGAAAGAATTCAAAGGC 72168 37 100.0 36 ..................................... CTTCTATCCATCCTTCCATTGCTTCAAGTAAATTAT 72095 37 100.0 35 ..................................... GGACAGTGCCTTAAGGTGTATTATTTCATCATTTT 72023 37 100.0 35 ..................................... AAACAACGAAAAGATTACACGTTAAAACTATTTGA 71951 37 100.0 34 ..................................... TAACGCTGATAATCCAGTAAAAGTTACATTTTCT 71880 36 89.2 0 ...............................-.T.TT | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 98.8 35 CTTAAATCTTAAGATCCATTAAAACAAGGATTGAAAC # Left flank : TAATTGGTAACATATTGTCTATGTCTAAAAGGTTTAAATATACTGTTGATGAGAAAATTATTGCATATTTAAATCTACAGCCTTGTGGAATAAGGTTTAAAAATAAGGATATGTTGGGATTTAAAGGAGAATTTATTACAAATTTTAAAATTCCAGATTATATGGCGGTGGGAAAATCAGTTTCAAGAGGCTTTGGAACAGTTAAATATATGGGAAATTTTGATTTTAAATAATTATGTTTTCATAGAAAGCATATTATTACAAGTGAGTTAATAACCAACTATTTACTAATGATGAGTTACATTATATAATAATTATTGAGAAAATAAATTTCCAGGTCTGCATAGCAGCTATATATATGGGATTAAGATGTCTTAAAAGTATGTAAAACTATAAAAAAAGCACTTTTTTAATCAAATAACTAATAAAAATATTAGCTTTAAGCTTGTCTTAAAATTAATATTAAGTATTGAAGTTATGTACTTTTGCAAGAATTACGG # Right flank : TTGTACATAAATTTCAGGCAAAAATATAATTAAAACCCTGCCCACCAAAAGATGGAAATCACTCTTTTAGACTATTAAGCCAAGCTTTAGTTTCTTTAATTCTGTAAGAATTTCCATTCATATTAACAACGTAGGATTTATTGGTTAACCTATCGGTCATTGTTGCAGTCATAACAGGATTTCCAAATATTTCACCCCACCTGTTGTTATTGGCAAGTACTTTTGGAGAAATTTCGGCAAACTATTTTACTGAAGTTTTTCCATTTTTTATTCTCTAAAATATAGATTTCCTATGTTAAAGTCTATAACTTTTACCAGTCATATTAAAAAGCTCACATCTGTAAGATATTCCTATCTAGTACAGCCGTAGTTAAAGCAGGATCTCCTAAGAGCTCAACCCAATCTTCGAAACCTTTATTCGAGGTGATTATAAGTGAAGCCTGTTCATGAAGTGCTGATATTAATTGAAAGAGCAGATTAGCTTCGTCCCTGGTTATAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAAATCTTAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1744-674 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXO01000056.1 Clostridium liquoris strain DSM 100320 CLLI_contig000056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1743 30 100.0 34 .............................. ACTTTAAGTGGGGGAACTTCTCCAAACTACACTA 1679 30 100.0 34 .............................. ACTTTTTTGTCCACTAAGTACAGCCTGCTATAAC 1615 30 100.0 35 .............................. ACTTAAAACTATTGAAAGCACTAAAACTGTTATAA 1550 30 100.0 36 .............................. GAACTATACCCATATCTCATACAGTTTGTAAAGAAT 1484 30 100.0 34 .............................. TTAGCATTAAGCCCCATTTCTCCAAGCCATGATT 1420 30 100.0 35 .............................. GTTGAAACGTACCTGTATTAGTGCTATTCGACCAA 1355 30 100.0 35 .............................. TCTGCTAAGTTGTTAGTTTCATTAACTTTCTCTTG 1290 30 100.0 34 .............................. GAGATATAAAAGTCAAGTTTACTCCTAATATTCC 1226 30 100.0 37 .............................. GCAGTTAACAGCAATATGAAAAAATATGGTTATAATA 1159 30 100.0 36 .............................. TCTGTAGTACTAGATAACACACGTGTATTAGTAAGC 1093 30 100.0 36 .............................. CTGTCTATAAATTCTTTTAATGTTGGCAGATAGCCT 1027 30 100.0 34 .............................. TTAGATAAAAACGAATTAGAATTATCACAAGCTT 963 30 100.0 36 .............................. AGCTTAAATTGCTTAAAAATTTTTAGACAGTATTTT 897 30 100.0 36 .............................. TAGCTTAAGACTTAGTGAATTAGCAAATATTAAATT 831 30 100.0 34 .............................. ACTATTATAGTTACAACCACTATTAAATATGTTA 767 30 100.0 33 .............................. TCATAATTATTAATTACATCATCTTCAACTTCT 704 30 100.0 0 .............................. | C [676] ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 35 GTTGAACTTTAACATAGGATGTATTTAAAT # Left flank : ATGACCCAATTGTTACTCAAACTCATCAATCAATGAATAATGTAAAGAATATATTAGAATCACAGGGATTGAGCTTTAATAATGTTATAAAGAGTACAGTATTTATAACAGACATGAATGATTTTCCAAAGGTAAATGAAGCATATGCACAATATTTTCAAGGAACTTATCCAGCTCGTTCATGTGTACAGGTAGGCAAATTACCCAAGGGCGCATTAGTAGAAGTTGAAGTAGTTGCACATAAGTAATAAATTTTCTAATGAAAAATTGAGGATGTACCTATTCAGGGCATCCTCAGTTTTTTAATTTTTTTCTATAACAATTATCCCAACTGAATTGCAAAACAAAAGTGTCAAAACCCTAATCATATCAATGATTTGCATAGTATTTTTGAAAAGAATATTTATTTTACAAAGTAGGTTGGGACATTTTCTGAAAAACCCTGAGCTTTCAATGGGTATATGCTATTGCTGATTTAAAAGAATGCTGATTTTACAGTG # Right flank : AATGGGCGGAATTCTTCCATCCTCTTAGGTGGAAGATGGATAGCCCTCTTATTATTTTAGGTTCGATACATAAAATAATAATTTCTCGATGAATTATCATAGATTATATATCCTAAAATAAGGAGTAAGGCTATAAATATGGTAAACAAATGAATTTAGATACAAGTTATAGGGGAAGAGTAATAAATGAGGTGAAAATCTGTGATTAAGAAAAATAAGGGGTATAAATTTAGGCTAAAACCTAATAAAGAACAAATGGTATACCTAGAGAAAGCTTTTGGTTGTAGTAGAAAAATGTATAACTTATATGTTGATATGCTGTATAAACAACTTGATGAGAAAAATTTTATTACCGGAAAAATTGATTACAAGGCTATACACTTGCCAACACCAGCAATAATAAAAAAAGGTTATGAGTATATGAAAGAAATAGATTCATTAGCTTTTGCAAATGTACAGCTTAATTTTAGGGATGCTATAAAAAAATACAATAGTGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //