Array 1 110509-107977 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIZ01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_BAC0700001643R1 contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110508 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 110447 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 110386 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 110325 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 110264 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 110203 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 110142 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 110081 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 110020 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 109959 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 109898 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 109837 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 109776 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 109715 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 109654 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 109593 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 109532 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 109471 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 109410 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 109349 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 109288 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 109227 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 109166 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 109105 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 109044 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 108983 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 108922 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 108861 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108800 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 108739 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 108678 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 108617 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 108556 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 108495 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108434 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 108373 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108312 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108251 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108190 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 108129 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 108067 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108006 29 96.6 0 ............T................ | A [107979] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128411-127224 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIZ01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_BAC0700001643R1 contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128410 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 128349 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 128288 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 128227 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 128166 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 128105 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 128044 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 127983 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 127922 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 127861 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 127800 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 127739 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 127678 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 127617 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 127556 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 127495 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 127434 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 127373 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 127312 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 127251 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //