Array 1 6456-2879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIB010000018.1 Castellaniella defragrans strain DSM 12141 Ga0415270_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 6455 28 100.0 32 ............................ CATCATTCCTCCCACGGCCCAGGAAAATCCCG 6395 28 100.0 32 ............................ GAGACGCACTTACGAAAAATCCGACGCTTCGT 6335 28 100.0 32 ............................ AGTCCCGACGACGAATACGCATCGCGCGGTAG 6275 28 100.0 32 ............................ CAGTCCTGCACCCCGCCCGCCACCCCATAACC 6215 28 100.0 33 ............................ CCGACACATCAGTGCATGAGCCCATGCTGGGCC 6154 28 100.0 32 ............................ TATTTGGATGTAGCCATGGACGAGCCCGGACA 6094 28 100.0 32 ............................ TTTTTCGCTATTCGGCAGTCGGGTAAGGCGGC 6034 28 100.0 32 ............................ TTTAGGGCGGGGGGGACGTCAAGATGCGATCC 5974 28 100.0 32 ............................ CGACTCATGCCCCACCTGCGCCAGGAACGCGG 5914 28 100.0 32 ............................ TATGCGATGTGGATCAGCGCCGCGTTTCATCT 5854 28 100.0 32 ............................ TTGCCCCTCGCGGCGCTTGAGCACAGCCAAGG 5794 28 100.0 32 ............................ ATGAAGCCATCGAACGGGTCAACGTTGGCTTC 5734 28 100.0 32 ............................ TGACTGCGCGGGGCGCTGCCGTGGCCGAGGCG 5674 28 100.0 33 ............................ CTGGACGCCGCCGAGGACGCCGCGATCCAGTAC 5613 28 100.0 32 ............................ AACCCCAGTCCGCCGGAATGCCGACCTGGATA 5553 28 100.0 32 ............................ GTCTATTTGTGGACGAATCGATCCGGACAGCC 5493 28 100.0 32 ............................ ATCGGTCACCCCAATATTTATGCGGGCTTCGA 5433 28 100.0 32 ............................ TCATCGGACAGCAGGTAGTTGCGCCAATACCA 5373 28 100.0 32 ............................ TGGCATAGTCGCTCCCAACAAAAGCCCCGCGT 5313 28 100.0 32 ............................ ATGCGGGGCAGGAGCCCCAGCTTCGCGTTTTT 5253 28 100.0 32 ............................ TGTGTGTCGGCCAATGCGCGTGCCGCAGCCAC 5193 28 100.0 32 ............................ AGTACGCGGCAGAGCGTGATGCGCTGCGGGAG 5133 28 100.0 32 ............................ CGCTGGACACGCTGGAAGCCAGCGACCGTTGG 5073 28 100.0 32 ............................ TCGTCGAACCAGGTCAGCGCGATCACGCCGCC 5013 28 100.0 32 ............................ TTCGTGAGTTCGGCGTTACGCAGACGCAGGGA 4953 28 100.0 32 ............................ AAGCCCCGCCAGATGATCCTCGTGCCAATGCG 4893 28 100.0 32 ............................ GTTTGTCGATGGCCTCCAGGTTGCGCTGATGC 4833 28 96.4 32 ................A........... TCGACGTCGGCAAGCTGGTAGCTGGTGCCCAG 4773 28 100.0 32 ............................ CCTGTCACGCCCTCGAAACCGGCCGGGCCGGT 4713 28 100.0 32 ............................ CTCCCCGTTGCTGTCACGCTGCTGGATGGCAG 4653 28 100.0 32 ............................ CTCCCCGTTGCTGTCACGCTGCTGGATGGCAG 4593 28 100.0 32 ............................ TTCGACGCGTCGGCGTCCAGCAGTGCATCGTC 4533 28 100.0 32 ............................ GCGACGATCTCCGTTTTTCGCCCAGGGTCCAG 4473 28 100.0 32 ............................ ACGCGAGGCCACCTTCATCGATCACGCGATAC 4413 28 100.0 32 ............................ AGATGCGCGACGCTGGAATAACGCGCTGACGG 4353 28 100.0 32 ............................ GCGAAGATCGCGCTGCCGTAGCCCAGGATCGA 4293 28 100.0 32 ............................ ACTTCGCCCGCCCGGCGTTCAGGCGCGTTTGT 4233 28 100.0 33 ............................ TGTCGGCTACGCCTTTCACGAAGGGACTGGGAA 4172 28 100.0 32 ............................ TGGTGGGCCAGGTCGCACAATGCGGCCAAGGC 4112 28 100.0 32 ............................ TCAATTCGATGCTGGCGATGCTGGGCACCAAC 4052 28 100.0 32 ............................ CGCCAATGTCTGACATCATCGGCCGCCTGCCG 3992 28 100.0 32 ............................ TTCGCAGAATTGATGATGACCTGGCCGACATC 3932 28 100.0 32 ............................ TGCCGCCGTTTAAGATTCGCGCCCACTCCATC 3872 28 100.0 32 ............................ TGATCCGCCAGGCCTGCCCGCTGCCCTGGTCC 3812 28 100.0 32 ............................ AAGCCCGGCCAGCGCCCAGGCAGGCAAAAGGT 3752 28 100.0 32 ............................ TCGACAATGAAAACAAAATAAGCATGAACAGA 3692 28 100.0 32 ............................ AATTGGCCGCCGTTAACAATGCGCTGCGCTAT 3632 28 100.0 32 ............................ GCTAAGTCTTGGGCGTGGCGCAGGTATGTGCA 3572 28 100.0 32 ............................ CTCGCCGACGTGCCGCTCCCGGCCCGATGCAT 3512 28 100.0 32 ............................ AAAGCCTGGGCCAGCGCCTGCGCTTTCGCCTT 3452 28 100.0 32 ............................ GACGAGTGTGAGCACGATGGCCAGCAAGGGAA 3392 28 100.0 32 ............................ TACCCCGGAGAGGACCAGTGAACCGCCAGCAA 3332 28 100.0 32 ............................ TTGACGGAGTGCCCAAGACGATCTCGTTCGGT 3272 28 100.0 32 ............................ TGGGCTGCGCTCACCGGACGCGCGTGGCAGAG 3212 28 100.0 32 ............................ TGGTGGCGGCCGCAGGCGTGCTCGAACAGATC 3152 28 96.4 33 ....................T....... CAGACGCCCATCTGCTGAAACCCCTTGGGCGTG 3091 28 85.7 156 ....A................C....GC CTGGCCCGAAGCGGAACCCCTGCTGCCATCAGCTCGTCGCCCGCATAAGCAATCACAGAACAGCGGGAACACCCTCCTCCTTGGCTGGACGCCCGCCCATCGTGGTCCCAGGCCTCCCAAGAAAAACCTGGACGATGACGGTAATATCTCGCAGAA A [3065] 2906 28 92.9 0 .CA......................... | ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 58 28 99.5 34 GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Left flank : TGCCTTGAGTACCTTGCTGTCCACCGACTGGCTGCGAGGGATGCGTGACCATGTAGAGTTGGGGGCTTTGTCTGCCGTGCCACAGGATGTCCAGCATCGCCGTCTGCTGCGCCGCCAGTTCAAGACCAGTGCGGAGCGTCTCCGTCATCGACGAATGCGCAGAAAGGGGGAAACCTACGAGCAGGCGGTGCAGGCCATCCCCGACAGCGTGGAACGGCAGCCGGACCTGCCCTATGTGCAGTTGCGCAGCGCCAGCACGGCGCAGCGGTTTTGCCTGTTCCTGGCCTTGGGGGACGCGGAACCGCAGCCCGTGGCCGGTGTGTTCAATACCTATGGCTTGAGCAGCACGGCCACACTGCCCTGGTTCTGACCCTTTTCTGAGGAGTTCTTGCGATCCCCTTATCAATCAGTAGGTTACGAAACACTCAAGAAATTGGGTGTTTCGTGCTTTCCTGCTGGAGATCTTTAACAAATCAATAGGTTAGGAGTTTTTGTTTCTA # Right flank : CACGGAGATCCACCCAATGCACATCGGCATGGTAGGTTTGGGACGCATGGGCGCCGGGATGGCGCGGCGGCTCATGGACAAGGGGCTGAGTTGCGCTGTCTACGACCCCCAGGAAGACGCCGTCGCCCGGCTGGTGGCGGACGGCGCCGTCGGGGCGGCCTCGCTGGCCGAACTGGTCGAACGGCTGCCGCGACCCCGGGCGGTGTGGCTGATGGTGCCGGCGAGCCTGGTGGACGGGGTGCTGGACCAGCTGGCGCCGCTGCTCGATGCGGACGACGTCGTGATCGATGGCGGCAATTCCTGCTATCACGACGACATCCGGCGGGCGAAGGCGCTGGCGGACCGGGGTGTTCATTATCTGGACGTCGGCACCAGCGGCGGCGTGCATGGCCAGGCCCGGGGCTATTGCCTGATGATCGGCGGCGACGCCGCCGCGGTCGGGCGGCTGGATCCGGTGTTCGCGGCGCTGGCGCCGGGCCGGGACGCCGCCCCGCCCACGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //