Array 1 174921-173366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTW010000002.1 Salmonella enterica strain S19 NODE_2_length_670003_cov_123.418164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174920 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 174859 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 174798 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 174737 29 100.0 32 ............................. TCTCAACAGGCACCACTTATTCTAACAGCGCC 174676 29 100.0 32 ............................. CGCCTTAAATTGCTGCCCGGCCTGGCTAACAG 174615 29 100.0 32 ............................. CATCAGATCCTCGCTATCTGGATATGGCTGCG 174554 29 100.0 32 ............................. TGTTGTTACTTTGTTCAGTCTGGCCCATAGCG 174493 29 100.0 32 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGA 174432 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCCTGACCGCCCT 174371 29 100.0 32 ............................. ACGCCCTCAAACACACGTATCTCGGCTACGAA 174310 29 100.0 32 ............................. TCTACAGACGTATTACAGCAAGGCGAAGCAAC 174249 29 100.0 32 ............................. CCCTGCGTCAGTGCGGCAAACGTCACCTCGTC 174188 29 100.0 32 ............................. GATTTATATCCATTTCCGCGAGCGAACCGGAG 174127 29 100.0 32 ............................. CGATCGGTATTCGACAAGCTCATCCAGCAGCT 174066 29 100.0 32 ............................. TGTGGGTTATCAACCTCTTATCTTGAGCAGAT 174005 29 100.0 32 ............................. TGGGATAAAGGACGTGCCGACACCGTTTTTTA 173944 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGATCCAACC 173883 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 173822 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 173761 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 173700 29 100.0 32 ............................. GGAGCACGGTAAACCACTGGCGCAAGGGCCGC 173639 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 173578 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 173517 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 173456 29 96.6 32 ..........T.................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 173395 29 93.1 0 A...........T................ | A [173368] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATTCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGAACTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 192871-191806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTW010000002.1 Salmonella enterica strain S19 NODE_2_length_670003_cov_123.418164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192870 29 100.0 32 ............................. TCTTCGTCGCTGGCGGTTCCCCAGTCCCCCTT 192809 29 100.0 32 ............................. ACAAACCCCTGTTTTGTTATCAACAAACTGTG 192748 29 100.0 32 ............................. TTCAATTCCGTTAATCCAGGCCTGCCGTACTG 192687 29 100.0 32 ............................. GCGGGCGCTCATGTCAAACGCCATCAGCGTTC 192626 29 100.0 32 ............................. AGGATATTCGTGTTCTCATTGATGCGATCTCT 192565 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 192504 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 192443 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 192382 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 192321 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 192260 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 192199 29 100.0 32 ............................. AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA 192138 29 100.0 32 ............................. CGCTGATTACTATACATAGTCAGCGGGCAATA 192077 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 192016 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 191955 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 191894 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 191833 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //