Array 1 57588-63244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCNK010000003.1 Pedobacter sp. MR2016-19 Contig_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 57588 46 89.1 30 ..............GA..G..CC....................... ACTGCATTTTTGTTTGTTACTGGCTTGTCA G [57609] 57665 46 100.0 29 .............................................. GCCATGTTGGAAAATACATTATCTACCTG 57740 46 100.0 30 .............................................. AACCTTGCAAACCAAGTAATACATTTCCGA 57816 46 100.0 30 .............................................. TGAAAAAGAGAGATTTTGTAATGCAGTTTG 57892 46 100.0 30 .............................................. GGGATAGCACAAACATTGCTCAAGTTATCC 57968 46 100.0 30 .............................................. AATATCATAGTCTAAATATTATGTTTGTAT 58044 46 100.0 30 .............................................. CTTTTAGCGGCATAACAGTAAGAGTAGCCT 58120 46 100.0 30 .............................................. CGTCAGGCATTGCATCAAACTGCTCTGAGG 58196 46 100.0 30 .............................................. AAGTAGTAACTTTATCGAAAGCTTTCGTCA 58272 46 100.0 30 .............................................. ATTACTTAATTCGTGTATCATGGTTGATCA 58348 46 100.0 29 .............................................. ACAAAATAAACATGATGTATAAAACGCTA 58423 46 97.8 29 .........................G.................... AATTAATAGAAATGTGGACTAAGATGTTG 58498 46 100.0 30 .............................................. TTTGAACGTGATAATTTATTGCAAAGCGTT 58574 46 100.0 30 .............................................. TTCGATATTGTAAATAATCTAAGCCGATTA 58650 46 100.0 30 .............................................. AATAGATAAACAAACAAATAATTATGTCAA 58726 46 100.0 29 .............................................. AAAAATTATCTGGTTTAATCAACGAATCA 58801 46 100.0 29 .............................................. TGAAACGCCTGAGATCGTAACAATAGAAA 58876 46 100.0 30 .............................................. CGACCCGAAAAAGGACATCTTCCTTAAGCA 58952 46 97.8 30 A............................................. TAGTTCTCCCGCCTTGTGGATACAGGGCAT 59028 46 100.0 30 .............................................. TGTACTTCATCGGCAGCATCATCCATTATA 59104 46 100.0 30 .............................................. TAAGGAAGCGCATAGCCTCCTGATCGTAGG 59180 46 100.0 29 .............................................. CTTATTTTTAACTCAAGATAAGTTTTACC 59255 46 100.0 29 .............................................. ATCACCAGATAGACGTAAATGATTAACCA 59330 46 100.0 29 .............................................. AAAAATTCAGGTCAATATCATTTGCCGGA 59405 46 100.0 30 .............................................. TCACCCCTTTATCAGTAATTTGTGTTTACG 59481 46 100.0 30 .............................................. TGAAAAAGAGAGATTTTGTAATGCAGTTTG 59557 46 100.0 30 .............................................. TAAATATGTAAATACCGACAACGGTAGTTA 59633 46 100.0 30 .............................................. AGATCCCACAACTTGCCAGGCACATGACCA 59709 46 100.0 30 .............................................. CCTATCAAATTCTTGAGGCCAAGTGTTCCA 59785 46 100.0 29 .............................................. GATACTTGGCGAAATGGTAGCCATTGCCG 59860 46 100.0 30 .............................................. CTGGTGTAGCTGTTGCAACTGGTTTGGCTA 59936 46 100.0 30 .............................................. AAAATATATTCAAAACAAAATGTTGAATTA 60012 46 100.0 30 .............................................. AAGCCAGGTTAATACTTTCCGGCTTACTCA 60088 46 100.0 30 .............................................. AATTAGAAATTTTAAATAAACGTCGTAGCG 60164 46 100.0 30 .............................................. AAAAAAAATTCAAAGTATTAGTACAAGACC 60240 46 100.0 30 .............................................. TATTTAAACTAAAGTCAAAATGACAGAAGA 60316 46 100.0 30 .............................................. TTAAAATTTCTTAAAGTAGCAGTCCAAACA 60392 46 100.0 30 .............................................. AATCAGGTGTTGCGAAATTACCGTTAGGCT 60468 46 100.0 30 .............................................. GCTTTGCCGTAAGCTTTTTAACGGTTAATA 60544 46 100.0 30 .............................................. CTTTTGTCAAGTCTAAGTTTTCGTCGCTGA 60620 46 100.0 30 .............................................. CTACTCTCGATAATGCGGATATCACCATCA 60696 46 100.0 30 .............................................. ATGTTGCTATAAATTTCTATGAGGAAAAGG 60772 46 100.0 30 .............................................. TTTTACCGGAATTAATTGTAAATAAACATT 60848 46 100.0 29 .............................................. ATAAACCCTAAAATCTCAAGCAATGAGTA 60923 46 100.0 30 .............................................. ACTTAGAAAATGAAGGTTTTGACATGTCAT 60999 46 100.0 30 .............................................. AATATCCTAAAGCTAAAGTTATTGTTTGCT 61075 46 100.0 30 .............................................. AAATAGTAGTGTAAAAGCTACTATCATAAA 61151 46 100.0 29 .............................................. TAAGAATATAAAGGTGCATACTGTTAGTA 61226 46 100.0 29 .............................................. GTCATGTTACAACTAACAAACACAACAGA 61301 46 100.0 30 .............................................. ATCCAGCAAAATTATAAAGCTGCTTTACAA 61377 46 100.0 30 .............................................. TAGAACTATTGAAAAAGTTAAGTCGGAAAA 61453 46 100.0 30 .............................................. AGGAACCTGTTCTTCATGAGGTTCTAGGCT 61529 46 100.0 30 .............................................. GTCGATGCAAATATTGTTGCTCCGGCACCA 61605 46 100.0 30 .............................................. TCCTGGGCTAATAAATCATTGTATAAATCA 61681 46 100.0 30 .............................................. ACCGTTGCGGAGCGGGAAAACACCGAGGAG 61757 46 100.0 30 .............................................. ATTTTGTTATCTCTTGCAAAGCCTAAACGA 61833 46 100.0 30 .............................................. AAAACCGGAGCATCATCAACAACGATATGA 61909 46 100.0 30 .............................................. TATTACTAAAAAGAAAGGGAATTAAGATGA 61985 46 100.0 30 .............................................. TTATTGCAACAGAATTAACAACCCAGAAGA 62061 46 100.0 30 .............................................. TGGCTTTGGATGAAAGCACAGCCCGGGAGA 62137 46 100.0 30 .............................................. TTCATCACCAGTACTGCTTTGCGGAACCCT 62213 46 100.0 30 .............................................. CAATTTTCGATGATTTCACGGTGTTGCCAG 62289 46 100.0 30 .............................................. GATGCCGGAACAGAAGATATGGCTTAATAA 62365 46 100.0 30 .............................................. ACTTTTTCATGTCCCATTATACGTTGCAGA 62441 46 100.0 30 .............................................. TTTTTCCGCTTGACGGCTGCCCAGCTTGTA 62517 46 100.0 30 .............................................. TTTCCGGTGGTACAGCCATCACCCGACAGG 62593 46 100.0 30 .............................................. TTCTACCAGAATTTATAAGCCATACAACCA 62669 46 100.0 30 .............................................. ATTTAGGCAATATATCTGTTGCGGTAGCCC 62745 46 100.0 30 .............................................. CCGATGCGCTTATTCAAAGTTCAAAAGATA 62821 46 100.0 30 .............................................. CTGAAGGTTACAAAAGTCTTGTGTCTGCAA 62897 46 100.0 29 .............................................. CTAAGCTTGAACAAACCGATAAAGATTTG 62972 46 100.0 30 .............................................. TGGTTATTTGCTGGGAAGCAATGCAAGCCA 63048 46 100.0 30 .............................................. TAAAACTTACTATAAACATCTTTACAGCCT 63124 46 100.0 29 .............................................. CGAGCGCGGAAGCTGCTTGCAGGATTACT 63199 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 75 46 99.8 30 GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Left flank : CATTTCGAACTGGATGATCAGGGCGGCTACGAAATTATGGAAGTAAATGACCTGGTGATACCCTTAAGCAACAGCCATTTTTCGAAAACAACCTTGACCTTACACCTGAATCACCAGGGCGATAAAGCGTTGATTTTCGCCATGGGCATTTCATTTTTTACGGATGCTGCCCGCTTTGCCGACCGGCGTTATTATGCAGGTAAAATTATTCAGGCCCTGCATGTAAAGGATGGTGTAATTGTCGATTTTGTGGCGCAACCTAAAGTGGAAAAGGAGATAATGGAGCAGGTGGATAAGTTAAGCTGGGTGGTAGAGGAAGGTTGAGTTGGAGTTCTGAATCACACATTTAAGCCATTCTTTTTATGTTTACGGTTAACCGTATAAAATTGTGTATCACATTAAATAGGTTTGGTACAATTAAATTTAAAACCAAATCTTATGGCCAGTTACCGATTAAATTTGAACCGACAAACCCAAAATTGTGCTGATGTCCGTGCCGC # Right flank : CATACCTTAGTTCAATTAACTATCCATCAGTAGGTTAGTTTAAAAATTAGAATTAAAAAAATCCGGTTGCAAATGCTTCCGGATTTTTATTCTAAATAGTTTTTTTGATTGTATTTGTAATTTTAAGAGACATAATGCTCTTTGAGCACCCCGGAAACCTCGGGGCAAGTGCTATGAGAGTGGTGAATTAAAACAATTCGAGTTGCTGTGGTGTATCCGGTAGTTCTTTTTCTTTTTTACCGTAAAATAATTCCATCATACCGAATTGTTTATCAGTAACGGTCATAATACCAATATGTCCTTTTTCAGGCAATAGTCTTTTTACCCGGTTAATGTGGACGTCTGCATTTTCGCGACTGCTGCAATGCCTTAAATAGATAGAAAATTGAAACATCGCAAAGCCGTCTCGTAAAATTTCCTTACGAAATTTAGAAGCAACGCTGCGTTCTTTCTTTGTTTCTGTAGGTAAATCGAAAAAAACTAATATCCACAAAATCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //