Array 1 98760-99497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBW010000011.1 Bacteroides sp. NSJ-90 NSJ-90_ctg011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 98760 47 89.4 30 ...T.A.....T..AT............................... GAATACAGGACGCTGACGGAGATATATCGG A [98763] 98838 47 100.0 30 ............................................... TTCATTTGCCACGATGTGAACTTATAGACG 98915 47 100.0 30 ............................................... TTCATTTGCCACGATGTGAACTTATAGACG 98992 47 100.0 30 ............................................... CTTCCAGGTCTTCAGTTCCTTCGGCAGGGA 99069 47 100.0 30 ............................................... GAGTTGCTCAGATTGTCTTCGCTCCTTATG 99146 47 100.0 29 ............................................... ATCATAAATGTCAAGAGTATTGGAAGTTA 99222 47 100.0 30 ............................................... TCACCAGTCTCAACATCTACCAAGTCGTGA 99299 47 100.0 29 ............................................... GTTTTCAAAGCGCAAACCTGTTCGATATA 99375 47 100.0 29 ............................................... AGTATATTTTACAGTACGTATTGCAGATG 99451 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 98.9 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TGCAGCGAAAGCAAAACAGATAGCCGGAGGCCATCCGCCGCTACGGTAAAGAGTCGCTCCATCGCTTGCAACTCGATTCGCTGCCAATGTTCTACCAGCACCGAGACAATCCGTAAAGCTTACGCTATTTGTCCCCTAACTGGAAGCGATACGTATAAACATCCGCATCGTGAATATATTGCAAACATTCGGTCGTACACGAGATAACCTCCGGAGAATGAAAAGAATCGGAGAACGCTGTAGCTGCCATTCCCGTTATCGGAGACCGGCACAATGCCGAACAGCAACGTCAAGTAGGTCGCTAAAGAATAGACAAATAAGGTAGTAGATCCGTAACTTGCTACTAACAGAACGGAGAAGCTACCTTACTTTTATATTATCAAAAGAAAACTCCCCATATTTTTTATAAAAAACCTCCCATATTGAATGTAATCCAATTAAAATTAGAAAGTGCGGAAGAATGGAAACAGCGCAAACCGCAAAGTTTTAGGTCGTACAAT # Right flank : CCCGTATTCACTTCTTTCTCTGCACGAATGCGTTGTGATTTGCTTTCATTTTAGTATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATGAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGCTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1814-2705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBW010000019.1 Bacteroides sp. NSJ-90 NSJ-90_ctg019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1814 47 100.0 30 ............................................... GAACCGAGTTGAGGTTGTTAATCATTTCTC 1891 47 100.0 29 ............................................... TGCAATTATCGGAAACTACTTCGCAGATT 1967 47 100.0 30 ............................................... CAACAATCAATAATTTCGGTAAAATTAAGA 2044 47 100.0 30 ............................................... GCCAACAATTAAAAATCTAACAGAATACTA 2121 47 100.0 30 ............................................... AATAAATCGAAAATTAAGAGAAGAAAAAGA 2198 47 100.0 30 ............................................... AAGAAGACAAATATACATACGTCCATGGAG 2275 47 100.0 30 ............................................... GCCTTCAAATTGAAAAATATTAAAAATAGA 2352 47 100.0 30 ............................................... ATCCAACCATCGGACCATTGTTCGGAAGCT 2429 47 100.0 29 ............................................... TGTTTAGAGAGAATCAGAAAACAAACAGG 2505 47 100.0 30 ............................................... AGTAATCAGATTAGGTGGACAACTGGCAAG 2582 47 100.0 30 ............................................... TGCGCATATACTTTTTCTCGTGAACTTTCC 2659 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ATCGGCATCCGCCTCGCTCTTTTTGAGGTAGAACGACACCTTTACATTCGCTTGTTCCATAACCTTTTACTTTGTTTGCAAAATTACCGGATATCGAGCAAATGAACGGCATGACGAATATAGCGGAATATGGAAAGAAGCTCCATGCGTAACATTCAGAACCCGTATTTTTTCCCTTTAGCGAAAAAAGCATTAACTTTGTACTCGCAAAATATGAGTGAAACAGCGTTCTTTACGGTGATGTCAGTGGCAGTGCATAGACCTTTTTCCAATATTGTTTTCGACCTTGAACAGGCAACGGATAAGTAGCAATTTATTTTCCTAACTCCTCCAAAACGGGGCAAAACCATATAATGGACGAATATAGGTAAAACCTACATATCTCCCTTTTATTCCAATAGTTTGCATTATTCCTGCGAAATCCATCCGTATGTGAGCGAGTTTCCGTATCTTTGAACCATTGGAAACAGCCAGTATAAGATAACGACCCGGCAGATGAG # Right flank : CCGAACATCAGTAACAAACTAATATACATACAGTTATATTAAACATTAGAATTTAAAAAAGATATAGTTTCCAAGAAAGAAATCCCGCTACATAGCGGGATTTTCTTTTCAGAATAGTTCTAACTGCTGCCCGGGAGTATTCACATCTACTGTTTTTTTCCCATAAAAAAGTTCTATATTTCCAAATTGTTTATCTGTAATACACATTATTCCAATACTTCCGTGCTCAGGCAAAATAGACTTAACTCTTTTTATATGTACCTCCGCATTCTCACTACTTGCGCAATGGCGAACATATATAGAAAATTGAAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAAGTCCGCATATGCCTTTTTATCTTTTTTTGTTTCGGTTGGCAAATCAAACAATACAAGTACCCACATAATCCGATATTCACTAAACCGTTCCATTACATCTCCGGATAAGATATTCTGCGCAACTCACCGCTAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //