Array 1 510114-512925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUZ01000002.1 Listeria monocytogenes strain FRR B 2887 FRRB2887_NODE_2_length_518465_cov_128.86_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510114 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 510180 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 510246 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 510312 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510378 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510444 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510510 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510576 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510642 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510708 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510774 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 510840 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 510906 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 510972 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511038 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511104 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511170 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511236 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511302 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511368 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511434 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511500 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511566 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511632 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511698 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 511764 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 511830 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 511896 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 511962 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512028 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512094 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512160 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512226 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512292 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512358 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512424 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512490 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512556 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512622 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512689 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512755 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512821 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512887 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512912,512918,512921] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUZ01000007.1 Listeria monocytogenes strain FRR B 2887 FRRB2887_NODE_7_length_181674_cov_116.556_ID_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //