Array 1 40933-41690 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZOA01000024.1 Bifidobacterium vespertilionis strain RST8 NODE_24_length_43301_cov_187.382126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 40933 36 100.0 35 .................................... TCCCTGCCGAAACCATCCAACGGGTTGTTCGACTC 41004 36 94.4 36 .......C..C......................... TCGCACCTGTACACGAAACCCTCGAAGTTGCTGTTC 41076 36 100.0 35 .................................... CCGGACATCCCGCTCAACCTCAACGTCGGCAACCT 41147 36 94.4 36 ..........C........A................ CATGATCCGGACAAGCAGCATTACATCGACGGCGAC 41219 36 94.4 37 ..........C...T..................... CCCCCGGCCTCTCCCCACCCAACGCCGCTGCGTCCTC 41292 36 97.2 36 ...................A................ TCGTCAAATCTCACCATCAAACCTCCAGTAATCCCC 41364 36 94.4 35 .......C.........C.................. GTGCAGAAGAGCGCGATCGGCCAGATCCCCGCGGA 41435 36 97.2 36 ...................A................ CATGTTGTCTTCTCCTTTCAGGATTGCATTTGTCTC 41507 36 100.0 35 .................................... CAATCCCTCGTCATGGATTCCGGCAGCACGAGCTC 41578 36 91.7 41 ..........C...T....A................ GAGCCTGCGAGACTCATCATCATCATCATCGACGAGACCAT 41655 36 91.7 0 ..........C.......................AA | ========== ====== ====== ====== ==================================== ========================================= ================== 11 36 95.9 36 GTCTCCTTGGTTAACGCTGGGGAGCTTCATTGAGGG # Left flank : GAATGCGTTTGCAATACAGCGTGTTCCTGTTGGAAGTGCGCAAGTCGGCTTTGCTGAAGGTCAAAGCGGCGCTTGAAGATGAGATTGATAGTTCTCAGGATTCGGTGCTGATCTGCGACTTGGATACGTGCGAAGGATCTGAGAGCGCCATGACGTTCATGGGAAGACGCGGATATCGTGATGTGACAGTGCCACAGATTATATGAGCGCGAACGTACGTTTATCCTGTCTTGTGCCTTTCCACGTATTCGCTGACTGGCAAGAAAGCTAATTCACCAAGACGTGATGGCAGCTTGATAATTGAAGAGTGCTTTGGTTGGAGTGCGATCCGCAATGCGAGAGCTATATCGAGATATTATTGCCTGTGAGCGCTCGCTGGCGGAATTCCAAGGTTTTTGGCTGCAAAGCATTGCAGCCGGAGCTTGTTATGTTCGCTGCTTGCTGTAGCGCTCGCATGGAAGGTATTTTGTTCCCCTGTGCTATGGTGTGAAGGTATGGCG # Right flank : ACGGGAGGGACGGGCGAATAAAAAATCGGGGCTGCCTGCACGGGGCGCTACTGGCCGAGCAGCACACCGTAGCGCGCGACGAGCCCTTGGTCCACTCGCTCGAATTCGGGGATGTACTCGTCGATGACCGTGCGCACGAGCTGCTTGGCGCGGGACTCGTCATAGATGTGCGCCGAATCGTTGCGATCGCGCAGCATGCGCAGCCAGAGCGATTCGTTCATGAAGTCGTAGTACTGGTATGCCGTTTTGAGGACATCGCGCGGCGATCCCGATGCGGAGACCGGATCGCCCTCATATGCCAGCAATGCCTTGAACAGCTTCCACCCGAGTTCGAACTGGAGCTCGAACTTGTCGATGATGCCGCTCTGGATGAACTCGTTGCTCAGATCCTGTGAAGGGGCCTGCCGCAGTGAGCGCAGTGCGGAAGCGTAGTTCTCATACTTTTTCATAGAGCACCTTCCCGGTATGGGCTATCTCCGTTCTCAGGGATTCTGAGATGG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTGGTTAACGCTGGGGAGCTTCATTGAGGG # Alternate repeat : GTCTCCTTGGTTAACGCTGAGGAGCTTCATTGAGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 19127-18120 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZOA01000025.1 Bifidobacterium vespertilionis strain RST8 NODE_25_length_43214_cov_150.569349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19126 29 100.0 32 ............................. GGCATCGGCATCGGCGACGCCATCCAAGTCGT 19065 29 100.0 32 ............................. GTCTCCGACGCCAAGACCGCGCTTCAGGACCA 19004 29 100.0 32 ............................. TCGGTGAGGTTCATCAGGGTGCGGCTGATGCG 18943 29 100.0 32 ............................. CCGTCGGTGCCCTGGGTGAGGAGTTCCGCGGC 18882 29 100.0 32 ............................. TTGTTCGAGCCATTCGCATGCCTCGTAGAGGG 18821 29 100.0 32 ............................. GCGGGGCAGCCTTTGGATTGGAGCGCGACCTC 18760 29 100.0 32 ............................. ACCAAGTGAGCGAAGGGAGACCGGCAATGCCA 18699 29 100.0 33 ............................. GCCCACAACCAGATCGCCTACCGCACCGAGGCG 18637 29 100.0 32 ............................. GTCAGCGGGTCCAAGCCGGCGGCGATGCACGC 18576 29 100.0 32 ............................. CCTTGGCGCGTCTGATCTTGTCCGGGCTCCAG 18515 29 96.6 32 ............................T CCTCCGACGCATAGCGCCGCCAGAGCGTCACG 18454 29 100.0 32 ............................. GCCAACGCATGATCTGGCACCATCCGGACCTG 18393 29 100.0 33 ............................. GGCACGGCGTAGGGCTCGGGCAGGACTGTGGAG 18331 29 100.0 32 ............................. AGCTGGATCTTCCGCATGAAGGACGGCAACGC 18270 29 100.0 32 ............................. GCGACGGTCACGGTCCTGACGGACATCGCGGC 18209 29 100.0 32 ............................. GGGGACGCGAAACGATGCAACCTCCAGCTGCC 18148 29 89.7 0 ................T...A.......A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTTGGCCCCGCATACGCGGGGATGATCCG # Left flank : ATGATGAGCCTGAGCGACCGCGTGGCCGACCCGGAGGATTCCTTGGACCATGTGACCGTGGTGGACGACCAGTACGGGCGGCTCACGTTCACGAAGGACATGGCCGGGGCGGTCTTCCACCTGTTGGATTCGCACGCGCCCTATGGCACGTACAACCTGACCGGGAGCGGCGCGGTGAGGAACTGGGCCGAGATCGCCGCGGCCGTATTCGAGCAGACGAACGGCAACGGCGACAGGGTCCAGCCGATCTCGACGGCCGAGTACTTCGCCAATGCGAAGAACCCGGTCGCGCCCCGCCCGACGCATTCCGCGCTGGACCTGAGCAAGATCGAGGCCGCCGGGTACACGCCCGCCGACTGGGAGGAAAGCCTCAAGGAATACATAGAGCGAGAACTCAATTGATAGATGCGATGCAGATCATGCGGATTGCGCTATGGCACGGTGCACGAATCGAATATTCTCACTTGCGCCACGACCAATTTCCCGCATAAAGTATGACT # Right flank : AGTAAGCGCCTCGGCTACTACCCAAATGGCGGTAGCGGGGGCGCTTACGTCCCAATCATACAGAGAGGCCGAGTGGAGCCGCCTGTAAAGCGGCCGTGCAATCCATGCAGGTTCGAATCCTGTACTACGGCAAACCACGGGATGAGTACCCGCCCATGCAGGGATGATTGATAATCTGGACATCAACCGGGATATCGCACCCGGACTTACGGAGGGGACAGACCAGTGAAAACGTTCAGGGAATTGAAGAGCGCCGCGCAGGCCGAGGCCGCGCGCCACGGTGACCGCATCATCGATCCGCTCGGCGTAGTGGACGGGAAGATGGTGTTCTACGCACTGCCGCCCGGCATACACGAGGGCGACATCGTCGGACTGCCGGAAGCCTACTGGGTGGACGTGCGCACGGGATCCGCCCGCCCGTTCACCAACAAGGAATGCCGTCTGCTGGTAAACAAGCAATTCCTCGAATCGGCCGAGCCCATGCAGGAGTAGGCCGCAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCATACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10994-11605 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZOA01000009.1 Bifidobacterium vespertilionis strain RST8 NODE_9_length_116984_cov_119.925573, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 10994 36 100.0 28 .................................... ACGGTTGCTGGCGATTTTGCTCTTGGAC 11058 36 100.0 28 .................................... TATTCGGCGAGTTCGATGTGCGCGGTGT 11122 36 100.0 28 .................................... TGTCAGTCGAGCGGCGCGGGGAGGGTGG 11186 36 100.0 28 .................................... TTGGGCGACGCTGGCGACGTGGCTGCCA 11250 36 100.0 28 .................................... TTCGAATCCTTCTTCTGGAAGGTCGCGT 11314 36 100.0 28 .................................... AAGCTTCTCGCCTTGCCTTACCGGCTGA 11378 36 100.0 28 .................................... TTGCGCGCGGGGTAGATGAGCGTTCCGG 11442 36 100.0 28 .................................... AGTTCTCCGGTAGGTCCGCGCAGGATAT 11506 36 100.0 28 .................................... GGGTAGCCGGTGGTGTTGGGCACGACCT 11570 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 100.0 28 ACAGCTTATCAAGAGGGGAGGATGCTAATTCCCAAC # Left flank : GTTCAATGGTGATGGGTTGACAATACCGAGCTCATTAAACGATTTTGCCCAGCAGTATGGGCTATATTGCGAAAGCAAAATAGACAGACTGACGGTTCCGGAATATCTGGGTACGCCATGAAAACCGACGAGGACAGTGGCGGTATGTGGTGCTTGGTGATGTTTGACCTTCCGGTGCAGACGAAGCGGCAACGCCATAGCGCTGTAGAGTTCAGGAATTTGCTGCTCGACATGGGCTACGGCATGGTTCAGTACTCCGTATATGTGCGGTATACACCCACTCAGGCTGGTAACCGTGCAACGGTGAAGGCCATCAAGGACAATCTTCCGGCTCAGGGATCCGTTCGTATTCTGCACATCAGCGACCATCAGTGGTCGTCGTCATTGCGGTTTTCCAATCTCAGACAGGAATCCGAAAGTGAGACGCCAGAGATCTTTACGCTTTTCTGAACGTGAAAACCTGTGGAAACGGCGAAATATGGCCCCTCTTGAGCGGCTCT # Right flank : CTACTGGTCGCCGTTGATGTGGCCGAGATGGCAGAAAGGTGTTCGCTGGGCGAGCAGACGACGATCATGTCCCCAAATTGCGTGGTCGTGCTGAAGTGACGGGACTGTTTGGTACTCAGAGTCGGCTCTTCCTTTCCCGATTGGGTGTTTCCTCGGCATTCGTCGCCGGTTTGGGATCAGTGTACGGCCGTTGTGAACCCCGTGTTTTCCAGCAATGCGACGATGATCGGCGTGTAGTCCGTGCGCACGACGAGCTGCTGCAGATCCCGCGCGTGGCGGTGGGGCCAGACGAGCAGATCGATGGTCCTGCCGCGCTTGGGGAACAGATTCAGCGGCGCGCTCAGCGTGATCAGGGTATGGCGTCCGTCGAGCGGTGTGAAGTCCGCCGTGTACGCGTGTTCCCGGCCGACGGGTCGTTTCGCCCGGGTGGGATCGGGCTTCGCGGCCGCTTCTGTCAGGTACGCCATGCCGGACATGGCGCTCGTCCGGTCATCGGTGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGCTTATCAAGAGGGGAGGATGCTAATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //