Array 1 680466-679458 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734722.1 Planktothrix agardhii NIVA-CYA 56/3 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 680465 37 100.0 42 ..................................... TCCCCGTTCTTGCTCACGATGTGAGTCTTTATTGCATCCTGA 680386 37 100.0 43 ..................................... CATTTAACTCTCCTAGGTATTCAGTGGTTTGGAGATAATAGAT 680306 37 100.0 35 ..................................... ATAGGACAATATTCTAGGGTTACAGTATTGCCATT 680234 37 100.0 41 ..................................... TCAAAGATATTAACCATCAAACCTTCTAAGGGTTTATCAAA 680156 37 100.0 39 ..................................... AACTTGTGTAACGAACTAGGGTATATTGACGAGCGTAAG 680080 37 100.0 34 ..................................... ACTATATCGCCAACGTCGAGCCATTAATCTTTGA 680009 37 100.0 35 ..................................... GTCAAAACTGTATCAGTGTTAATATGACTATGTGA 679937 37 100.0 38 ..................................... GACGACAGTACAGGGATGGATTAAGTTTTGCCATCAAC 679862 37 100.0 35 ..................................... AATATCCCCGTATTCGTACCCGTATTTTGAACCAG 679790 37 100.0 37 ..................................... AAGTAGTCTTATATCCCACTCAAGGGGATGAGTTAGA 679716 37 100.0 37 ..................................... ACAAAATCCCACTAACAGGAATCTGTCTTGTTTGCAA 679642 37 100.0 37 ..................................... CAAACGATTGAATGATTAATGATTAATATCTAAACAT 679568 37 100.0 37 ..................................... GGGAGAAAAATCTATCCCCAATGGTTGAGTCTCGCAT 679494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTGAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAATTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 886942-888758 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734722.1 Planktothrix agardhii NIVA-CYA 56/3 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 886942 37 100.0 39 ..................................... ATCTACCTCTCCCGCATCGGCACGGTCTTTATAGTTCTG 887018 37 100.0 38 ..................................... GTCCTAATAAGTAGCACCACGAGGCATCGAAGCTTTTT 887093 37 100.0 41 ..................................... TTTCCGCTTCCCACCCCATGCCCATTCAACTGTAATTTTAT 887171 37 100.0 39 ..................................... CAATTCATATTTATAATTTTGTAAACGGATACATTTCTC 887247 37 100.0 40 ..................................... GTCCCCCTATTAATTAGGCGATTTTGATAAACTTGGTTAA 887324 37 100.0 37 ..................................... GAATCTGAATATCCGACCTGGAAACGAGGGAAAAATA 887398 37 100.0 36 ..................................... TGTGACGATTATAAAAACCAGTTAGAACATCGGTTC 887471 37 100.0 39 ..................................... ATCCGTCCGATCCTCTGGTGACTTCAACGGATTTGACAT 887547 37 100.0 36 ..................................... GATTTAGCAATTTATTTATCAATGCGAGATTGTTCA 887620 37 100.0 37 ..................................... ACATTTAAACCGGGTAATTAACCCGGCTTAGATTAAA 887694 37 100.0 36 ..................................... ATATAGCCGCGATTGTGGCTTTAGATGTGACAACTT 887767 37 100.0 36 ..................................... ATTTTCGTTAACCGTTGCTAAAGTTATCTCAGCCGA 887840 37 100.0 35 ..................................... CCGTCGCCTCCCGATGTTTTGGGATGCGATCGCAA 887912 37 100.0 37 ..................................... ATAAGGTGGTATTTGTATCTTTTGGCAATGTCCAAAT 887986 37 100.0 35 ..................................... CGGGTTGAGTCAATAGTTGAATTAGCTATTTATTC 888058 37 100.0 35 ..................................... ATAAGGCATCCGTTTTAGAGGGATTGTCCGAGCTT 888130 37 100.0 36 ..................................... TCCACAATCCGGGGAGAGTCCTAAGCTTTCTTCCTG 888203 37 100.0 36 ..................................... CATGGTAATAAATTTCTCCATCATAGAAACCTATTA 888276 37 100.0 39 ..................................... CTGATATTGGACACCTTTTTTACAAATCATCGGAGCGGT 888352 37 100.0 39 ..................................... TTATAGCATTTAATAAAGAATTGATTGAACATACAGGAA 888428 37 100.0 37 ..................................... CTGCAATATTAGGATCACAAATTCCTGATATTGATAC 888502 37 100.0 35 ..................................... CTTGATAATTCTTAGAGTCGCTTTCGATGTCAAGT 888574 37 100.0 35 ..................................... AATTAAATTAGTTAGGACTTGAGACAATGAACGAT 888646 37 100.0 39 ..................................... TGGATGGTTCTATACCAATAAAAATAAAGAATCAATGGG 888722 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : CAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATTAGCCAAAAGTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGATTTATTGTCGGGGAATGATAGCCATTGATTATGAGAAGATTAAGAATTATAGCAATCCTATTTGAGTTGTGTAAAAGGGAACAGGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATA # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCATGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGTTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGAGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAATACTGGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 141015-141565 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE734724.1 Planktothrix agardhii NIVA-CYA 56/3 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 141015 36 100.0 36 .................................... TTTGTAGCCCCCAGTTGGTATGTTAAAATTCCGTTG 141087 36 100.0 39 .................................... TTCAGGGCTTTGTAGGCGTTCATCCACTTATTGTTTTTT 141162 36 100.0 40 .................................... CTTCATTTGTCGTGATTCATTAGACATGATTGATTCCCCT 141238 36 100.0 37 .................................... ACCATCATATCCATGACTTTTTTAACGTTTGATAGAC 141311 36 100.0 38 .................................... TATTCGCCTTCTGGCAGTTCAGTGGGCTTCACGATTTG 141385 36 100.0 36 .................................... TTGAAGACTTTATGCCAGTTAATTTCAACACCCCAA 141457 36 100.0 37 .................................... TGGATTAGGCTGTAGCTTTCCGTCTCAATATCTCCAC 141530 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 100.0 38 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : ACAAATCCAGAATTAGCAAAACAGTTAGGAGAAAAAGGTTATCAAAGAGCCATGACCCAATACACCAATAGGGCACTCGCTCAAGAATTGTTAATTTTTTATCAACAATTACTTGATCGCTGATGTTATTCTATATTATTGCCTATGATATTCCCTGCCATAAACGTCGTCGCAAAGTGGCGAACTTATTGGGGTGAATTTAGCTGAAGATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATCTTTTCTGCGAGGCTCAGGTAGAATCGCTGTAATGCTGATTCTGTTGTTGGTAGCCTCGCTATCCCTCTGGGTATGGGTTCTAGGGTTTTGATTAAGGAGTAAAATGTTGTTTCAGCCGATGAAATTTCTGAGCCTCGCAAACCTGATCTGGACAACCGATGACGTATGGGTTTAAAATGGGAGGA # Right flank : CTCGTTGAAATAGATGGGGGGGGGTGGAGTTTTCTTTCGTCAAAAATTTTCATCAACCCCTTTAATCAATCGCTATTTAACGATTAATTATCCACTTAAATTAGAGCAAATAGACAAACTAAAAACTGGGTTAGATGGCTTTAGACCGTTTTCATATAAGCGACCAGCTAAAACCCATCTGCTCTTGTGATTACCCACGCAGAAAAAAAGATCTGGAAAAAGCTTGCATGATCTGGGTGGTTGTGCTACATTAATAAATTGTCGGACGCATAGCTCAGTTGGTTAGAGCACCACGTTGACATCGTGGGGGTCGGTGGTTCGAGTCCACTTGTGTCCATTAATTTAAAACTCCTCGGATTCCTGCACAGTGTGGATTCTCTCTGTCGAGTGTCAAATCAAAGCAATATTATCCTGAATATCCTCAATCCAATTAAAAATAGGTTGATCGGGATGCAGATGATAAACTTCTATATATAACTCTCTAACTAACTTTTGAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //