Array 1 242177-241372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZW010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 311 NODE_2_length_730749_cov_27.2275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242176 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242115 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242054 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241993 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241932 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 241871 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 241809 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241706 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241645 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241584 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241523 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241401 29 96.6 0 A............................ | A [241374] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.2 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260168-258309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZW010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 311 NODE_2_length_730749_cov_27.2275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260167 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260106 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260045 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 259984 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 259923 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 259862 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 259801 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259740 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 259679 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259618 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259557 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259496 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259435 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259374 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259313 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259252 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259191 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259130 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259069 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259008 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258947 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 258886 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 258824 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 258763 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 258702 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258641 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258580 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258519 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258458 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258397 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258336 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //