Array 1 109898-108098 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGL01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 06-0615 NODE_1_length_451253_cov_4.0517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109897 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 109836 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 109775 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 109714 29 100.0 32 ............................. AGGCGCAGGACGCGGCAGCGGCGGCGAAAGAA 109653 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 109592 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 109531 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 109470 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 109409 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 109348 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 109287 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 109226 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 109165 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 109104 29 96.6 32 A............................ CCCAACGAATCCATTTTTAAATGTCTTCGTAT 109043 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 108982 29 100.0 32 ............................. AGGCACGAAAAGCCATGGCCGCCGCAAAATCC 108921 29 100.0 32 ............................. AAAAATCTCCTTCACAACCTGGGGGGCTCTGG 108860 29 100.0 32 ............................. AAAACAATATTAGACAGCGCGCTATATAAAGA 108799 29 100.0 33 ............................. GCGTATTTACTAAATAATTTACGTGTGCGCCGA 108737 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 108676 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108615 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108554 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108493 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 108432 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108371 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108310 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108249 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108188 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 108127 29 100.0 0 ............................. | A [108100] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127664-126475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGL01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 06-0615 NODE_1_length_451253_cov_4.0517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127663 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 127602 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 127541 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 127480 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 127419 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 127358 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 127297 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 127235 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 127174 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 127113 29 100.0 32 ............................. TGTGGTGGATCAAATACCACGACAGGAAACGA 127052 29 100.0 32 ............................. TCCAGGCTGAATAATTTCGGCGACGGCTTCGG 126991 29 96.6 32 ..T.......................... CTGAATGTCCAGAGTGTGGCAATCACTTTACA A [126987] 126929 29 100.0 32 ............................. CTGGCGCCGAATTTTTCTTTGAGGGTCTGCAA 126868 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 126807 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 126746 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 126685 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 126624 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 126563 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 126502 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTAGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //