Array 1 23278-22945 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000011.1 Streptomyces sp. S5 NODE_11_length_28244_cov_177.162_ID_86739, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23277 28 92.9 33 A...C....................... GGCGCTGATGGGCGCTCCCGAGCCCGTCCTTGT 23216 28 96.4 33 ...........A................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGC 23155 28 100.0 33 ............................ GCAGGTCAGGGGCTGGCTGGACGATCCGGACAC 23094 28 96.4 33 ....C....................... GTCTCACGGCCACCGCTCGGCTTCACGATGCGC 23033 28 100.0 33 ............................ GGCGACGGTGAAGGCGAAGCGCCCCACCCAGCG 22972 28 89.3 0 ....................C...GC.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : CACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACCGGCTACCTCCTGAAAGCCGAACGCCCCGAAGAACTCTTCACGGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAGGGGCTGGGAAACCGGGAGATCGCCCGGGCGCTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGGGCGGCAGGGGGTGGGTTCGTGGATTGGGGGGGTGGGGTAGGTGGGGGGTGCGTAGGTTGGGGGGTGAGTGGGAGGGGGCGGTGATGGGTAAAGGGATGGCAAAGGCCGTCCGAAGGTGCAGGTGGGGGAGG # Right flank : CCGCCAAACCTGACAGGTGTTCCCCCACCCAACTCCCCGGCCGAACCGGACGACACCCATGTCACTGAATCGCAAGCGCCCCGGAGCCCGCAAAGGCAACACACCCACCCCGCCCCGCCCTGCTCGCGCGTCAGCCTCACCAAGGGCACCCCCGCGTCGCCGACCAAAACACCCCCGCCAGAACACCCCTAGAACCGGACAAAACGCCCCCACCAACAGCAGCCATGCCAACCACCCTCAACATCACGAACACACGATGGTCACGAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11055-11234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000129.1 Streptomyces sp. S5 NODE_129_length_12038_cov_168.587_ID_86975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 11055 35 97.1 29 .......................A........... CACGGTCAAGACGGAGCCCGGCAACCGAC 11119 35 100.0 46 ................................... GCGCGGGCGAAGACCGGCACCGCCAGTCGCGGCGCAGCCACATCAC 11200 35 97.1 0 ..............................G.... | ========== ====== ====== ====== =================================== ============================================== ================== 3 35 98.1 38 AGCCCGGCCGGCGATTGAGGCCAGTCGGTGACCGG # Left flank : CCCGACCGTGCCGGTCACCGATTGGCCTCAATCGCCGGCCGGGCTATGAGGGTTCGCGGTGCGTTCGCCGGTTGGGTCGGGCGGGGCCGCACCGGGGTACCTCCTCACAAACTGCCAGGTGCGGGGTCAGTCGCTTCAAGGCGGCCGAGCACGGCAGTTTGCTGCGGGGGCACCCCGGCACGACCCCGCCCTACCGTCTCGTCGGCGTCGTCCCGCCGGTGGGTGGGGAAAAGACAGGCCGTCCCCAATTGATCTTTGTGGCGACCTGAAGCGATGACCGTGGTCACTGTGGAGAGGCCCGGTATCGGCGACGGCCTCATCCACCCTCCGGCGGTTGGCCGCGTACGAGACCGTGGGGTGGGGACGGGTCGGGGTGCCCCCGCAGCAAACTGCACACACGGCCGCCTTAAAGCGACTGACCCCGCACCATGCAGTTTGTGAGGAGGTACCCCGGCCCGGCCCCACCCCACCCACGCACCGGAGAAACCGCGAACCCCTAT # Right flank : GCGCGGGTGCTAGGCGGCGCTTTCGGAGGGGGCGGGCTCAGGGAGCCTTGTAGCCGCGGTGGAGGGCGACGATCCCCCCAGTGAGGTCGCGCCACGCGACCCTGCCCCAGCCGGCCTTCTGGAGCAGCCCGGCCAGCGCAGGCTGGTCGGGCCACGCGCGGATGGACTCGGCGAGGTAGACGTAGGCGTCCGGGTTGGAGGAGACGGCGCGGGCCACCGGGGGCAAGGCGCGCATCAGGTACTCGGTGTAGACCGAGCGGAACGGCGCCCAGGTCGGCTGGGAGAACTCGCAGATCACGACCCGGCCGCCGGGCTTGGTCACCCGGTACAGCTCGGCGAGGGCGGCCGAGGTGTCCTGGACGTTGCGCAGGCCGAAGGAGATCGTCACGGCGTCGAAGGTGTCGTCGCGGAAGGGGAGCCGCATCGCGTCGCCGGCCGTGAACGGCATCCAGGGGTGGCGCCCCTTGCCGACCTGGAGCATCCCGAGCGAGAAGTCGCAG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCCGGCCGGCGATTGAGGCCAGTCGGTGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 7349-6467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000157.1 Streptomyces sp. S5 NODE_157_length_11109_cov_132.598_ID_87031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7348 28 100.0 33 ............................ CGTCGCGGTCGGCGCGGGCGCCTCGTCCCGGGC 7287 28 100.0 33 ............................ TCACCGAAGAGGAGAGTTAAAGATTGCCCTATT 7226 28 100.0 33 ............................ GGAGCACAAGGAGCTGACGAGGCGCGCCGAGGC 7165 28 100.0 33 ............................ CGCCCGCTCCGCTCGGGCCAGCTCCTGCGGCCT 7104 28 100.0 33 ............................ GGAGTCGGCGGCCGAGCTGGAACAGCACTTCCG 7043 28 100.0 33 ............................ CAGCTTCCGCGCCTCGGCCGGGGTGTTGGGCTT 6982 28 100.0 33 ............................ CCTGGCCCGCCTCGCGGCCGACGAGACCGTCCT 6921 28 100.0 33 ............................ GCTCGCTCACGCTGCGGCGTCGGGCCTGCTGGC 6860 28 100.0 33 ............................ CTCCGGGCCGCGCACGCCGAGGACGTCCGGACG 6799 28 100.0 33 ............................ TCGGGCGTCTCCCGCTCGACGGTCAGGGTGTAG 6738 28 100.0 33 ............................ GCTCCAGACCCGCACCTGGGCCTCCGTTGCTCA 6677 28 100.0 33 ............................ GGGCAAGGCCGAGGGGCTGGTGAACCGACTCCA 6616 28 100.0 33 ............................ GGCCGCTTCGATGGCCTTGCCGATGTAGCCGTC 6555 28 100.0 33 ............................ TCGGTATGACGAGGGGCATCGGACGTTGCCGTC 6494 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CACGCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTAGTCCTCCACCACGGCCACGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGGGAGCACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGCGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCACGATCTCTGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GGAGGAGCTGGCCCAGGGAATCCTCCGCGAGCAGGATCAGCACCTTCCGGTCCCCGACCGTGCCAGTAAGGTCCAGCAGCTCACCGGCACCGTCCTCCTGCACGCACACCGCCTCCAGCACGACCCCATGGTCCGGGCCGGGGTACGGCTCTCACTGGACCGGGAAGCGCAAGAGGTCAACCGTCAGGGAGCCTTCACGCACTGGGGAACCGTCATCCGGGAACTCCTCGAACAGGCCGAGGCGCAAGGGGAACTCCTCCCCCACATCCACGTCGCCCAGACAGCCGACATCCTGGTCGGCCCCTTCGCCGGCGTACAGGCCATGTCGCAGGTCCTGAGCGACTACCAGGACATCCTCACTCGGGTGACCGCCCTGCTGCACCACATCCTCCCCAGTACCGTCCTTCCGCCCATCCTCGCCACGACCGAGATCACCCCCGCCCGTGCCCAAGCCGTCGCCCACGAACTGCGTCAGGACAGCACACACCACCACCCCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25460-26828 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000013.1 Streptomyces sp. S5 NODE_13_length_26980_cov_137.719_ID_86743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25460 27 82.8 32 .....-T.......-.G...........C ACCCCGGCACCTCGCCAGGAGGGCACCGCCAG 25519 29 96.6 32 ............................C TGCGCCGAGGACCCCCGGTCGGCGTGCGGGCT 25580 29 96.6 32 ............................C CTCGGCCGCCGTACCCCCGTCCCCACCGAGAC 25641 29 100.0 32 ............................. CGGGGCCGCTCCCGCCTCATGTACGACCACCG 25702 29 100.0 32 ............................. CGGTGGCCGAAGGCGCGGCATATGCCGATGTT 25763 29 100.0 32 ............................. GTCTTCGCCACGGACGAGATGCAGGCTCAGCT 25824 29 100.0 32 ............................. CAAGGTGGGCGCGTCCGCGTCCGTGAAATCCC 25885 29 100.0 32 ............................. CCGGCCCCGGCCTCGGACATGCGGGTGATGAT 25946 29 96.6 33 ............................C TGCTCGGTCTGGCCCGGGGTGACCTCCCAGTGG 26008 29 100.0 32 ............................. GGGGAGAGCGGCGGAAGTGGCACCCTGCGAGC 26069 29 100.0 32 ............................. GGCGGCGTCTCCGTCGAAATGACCAACAGCGA 26130 29 96.6 32 ............................C TGAGAGGGGCCCGACGCCTTGCGCGCGGCTCC 26191 29 96.6 32 ............................C CAGGCCATCTACGGATTCCGCGGCGCCACCGA 26252 29 96.6 32 ............................C GGCCAGCGGCCGGAGGGAGTGGGGGCGAGCGG 26313 29 100.0 32 ............................. CTCAGCCTGCGGTCTTCGTCCTCATGGACGCG 26374 29 100.0 33 ............................. GTGCGCGGCGACGTGGACTTTGGGCTCTCCGTC 26436 29 96.6 32 ............................C TGACTTGGTCTCGATGCTCACAGCGGATCTCC 26497 29 96.6 32 ............................A CTCACCGATCGGCATCTGCGTGACGACTTCGA 26558 29 100.0 32 ............................. ACCGTGGCGCCTACCGCGAGGCGGCCCACCTC 26619 29 96.6 31 .....................C....... CGCGCGGCGCGGGGGCGTCGACCGGGACACG 26679 29 96.6 32 ....................A........ CGTTGTAGAAAATGCCGTCCATGTCGATGTCC 26740 28 96.6 32 .....-....................... CGCGCCACGCAGGACCACTTGGCGCACCTGTT 26800 29 93.1 0 ..............C.............C | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.3 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : GGCGGCCAGCCGCTCCTCGCGCACCCCGGGCCGCTCGTCGGCGCCGTGGCCGGACTGGGCGAGGAAGGAGGCGATGAGGCCCTTGGTGGCGGCCGGGGAGAGCAGGGCCTCGCCGGCGTGGGCGACGCGGATGGCGCCGAGCAGTTCGGCGGGCTCGGAGCCCTTGCCGAGGAAGCCGGAGGCGCCGGCGCGCAGGGCGCGGACCACGTACTCGTCGACCTCGAAGGTGGTCAGCATGACCACCCGCACGGTGTCGAGGGCCGGGTCGGCGCTGATCAGCCGGGTGGCGGCGAGGCCGTCGGTGCCGGGCATCCGGATGTCCATGAGGACGACGTCGGGGCGGGCGGCGCGGGCCAGTTCGAGGGCCTGGTCGCCGTCGGCGGCCTCGCCGACGACCTCCATGTCGGGTTCGGAGTCGACGAGCACCCGGAAGGCGCTGCGCAGCAGGGCCTGGTCGTCGGCGAGCAGCACCCTGATGGTCATCGGCCGTCCTTCGGTGC # Right flank : TTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAGCCCCGGGCCTGGGGCTCAGTCGTCCCTACCTTGTTGATCGGGCTGAGCGAGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1155-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000268.1 Streptomyces sp. S5 NODE_268_length_8287_cov_137.089_ID_87253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1154 28 100.0 33 ............................ GCGCACCTGACGCCGGGGCAGGTGTTGTGGGAG 1093 28 100.0 33 ............................ CCTCCGCCCCTGGTGGAAGGGGGGCCGCGCCCC 1032 28 100.0 33 ............................ CCCACGACCCGCCCCGTCGCCGACATCATCGAC 971 28 100.0 33 ............................ GGCGACGTGGACCAGGAGGAGCCGGCCGTGTCG 910 28 100.0 33 ............................ CGTGCTGGCGGACGAGACGGCCTACCCCGCCGA 849 28 100.0 33 ............................ CCCGACCACCGCTTCATGCTCGCCTCCTACGCC 788 28 100.0 33 ............................ GAGGCCGCCCTCAGTCGTCACCCACCCGAGGCA 727 28 100.0 33 ............................ CGCCTTCGGGTCCGACATCCAGACGATCACGTC 666 28 100.0 33 ............................ CCTACCTGATCATCGCCGATGCCCTCCGGAAGG 605 28 100.0 33 ............................ CACCGCCCCGGCGGGCGGCTGGTGGTGGCGGTG 544 28 100.0 33 ............................ GGTCCCCGCGCCTGGCGGGCGCATTGAGCTGCA 483 28 100.0 33 ............................ CTTCAGCGCGCCGCCGGTGAGCGCGGCGGTGAG 422 28 100.0 33 ............................ CCGTGTCGTAGGGCTGGGGGCGGTCGGGGTCGG 361 28 100.0 33 ............................ CGAGCGCCAGGAGCACGAGCCACGACACACACA 300 28 96.4 33 .............G.............. ACCCATTCGTGACGGTCGGTGTCCGCATACACT 239 28 96.4 33 .............G.............. GGAGCTGGGACTGTCCTGGCTGACCGTCGACAG 178 28 96.4 33 .............G.............. GTGGCAAGGGAGGTATTCTGCCTGAGCCGCTGA 117 28 96.4 33 .............G.............. GGGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 56 28 92.9 0 .C............A............. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ACGCAGGCGTTGCCTTACCAAGATCGTGGACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGAGGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACTAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGTACCTGAAACCGCAGCGCCTCTTCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3622-2983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000391.1 Streptomyces sp. S5 NODE_391_length_6349_cov_130.354_ID_87499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3621 29 96.6 32 ................T............ GCCCTCGCCGGCGACCCCCACGGCCACAGCCT 3560 29 100.0 32 ............................. TTCGGCGGCGACATGACGAAGCAGGTGCTCAT 3499 29 100.0 32 ............................. GGGGATCTGCCTGCCCGGGGCCTACGCGGACA 3438 29 100.0 32 ............................. CTCCTCTACGCCGTCGAGACCGGCACCGTCAC 3377 29 100.0 32 ............................. ACGAACCGCCCCGCCTCTGCATCAGGGGGCGA 3316 29 96.6 32 ........T.................... GACCGCGACGCCGTGGAGTTCCTGCGCCAGGC 3255 29 100.0 32 ............................. TTCCCCAGCACGTCGCGCCGGCGCTCGGGGAC 3194 29 96.6 32 ............................G TCTGCGGCGATAGAGAACAGATTTGCCGAGAT 3133 29 96.6 32 ...........G................. TCCCTGGTCCACTGCTCGGCCATGTGGTTGGG 3072 29 93.1 32 .............CG.............. TACGTCATCGCCGACCGCATCGGCATGATCAT 3011 29 79.3 0 ...G.......T.....T.A...A.C... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 GTGTTCCCCGCACGTGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCAGCGCCTGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGGCGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGGGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTGTTGGGGATGGACGCGGTGGGGGCGGGGGTGGGGGCTTATGAGCGGGTGCGGGGGTGGTTCGGGTGAGGGGCGTGTGTTGAGGGCTGGGCGTGGGCTTCAATTGAGGGCGAGTTGGGGCTGCAAGGAGGGGCGCATTATGCGAATTTGGCGCGGAATGCCGGAGTTTTCGAAGTTGGCGTGGGCCGGGAGTTAGGGGAGGTAAACCCGCAGGTCGGAGAGA # Right flank : AAACTCGCGCGCAACAGCGGCGGACCAACCACCGCCCCGCTGGTGGGCGGTCCACCGCCTGTACGCCCCTTCTCCGCGCAGACGGCCGCAGAGGCAGCATCACCCCGAAGCGTTTCCGTGATCGGGCTCACACGAATGGGAACTTGCCCCCTACCCTGTCAGGGTCGACCTGTACGGGAAGGACAAGGCCATGCCATCTGACACCCCTCCGGACCCGTTCGCCGACGCCCTGGCATTCGGGCAGCGGATGGAGGTGCTGCGGACCAGGCGTGGGATGAGCCGGCCTGTTCTGGCCGGGCTGCTGGGTATGTCTCCCTCGTGGGTCAAGCAGGTGGAGCGGGGCCAGATTCAGATGCCGAAGCTGCCCGTGGTTCTGCGGATCGCCGAGCTGCTGCGCGTGCGTGACCTGGCCGACCTGACGGGCGACCAGACTCCGTCGGTCGAGCTGTTCATCGGCCCCGGGCACCCCCGGCTGCCCGCCGTCCGGGATGCCGTCAACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2847-2998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000431.1 Streptomyces sp. S5 NODE_431_length_5914_cov_140.688_ID_87579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2847 30 96.7 31 .............................T ACGTCGGCCTGGTGGCGGACGCGACGAGCGA 2908 30 100.0 31 .............................. CGACTGGGACAACCTCGACTCCTGGACCGAC 2969 30 86.7 0 ......................C.AG..T. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.5 32 CTGCTCCCCGCACGCGCGGGGGTGGACCCC # Left flank : TCTCCACGCGGGGGCCACGAGCAAGGCTCAGGCTCACAGGGCCGGGCCGCTGGATGAAGCGTCGGCTGTGACGCGGCCGCGCTCCGGGTTGCTTTGTGGAAGTGGCGACTTGGCTGCTACGAACACTCTGTCCCGGCTAGCTTCTTCCCGGGCGGTGCTTGGGGGCGGCCGGGGAGAGGGCCCTGCTGTCGGCGGGCTTGGGCTGTCGGGTGCCCTTCTCGACTCCGCTTCGGGGTTGGCTGGGCAGATCGCCTTTGCGGAGACGGGTCGCGCGGCCACGATCGGGACCATCCCCAGCGCCCAAGGGAGGCACACTCAGGCAGTGGCGCCGGGGCTCGGTGCTTCTGCCGGCCGATGACCGGGATGGCCATGCATGCAGTGCTCTGCGGCGAAAGCAAGGCGGCGGGGGAGGGATGCGGACGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACTTGCCGAGGTAAAGATGCAGGTCAGGGAGA # Right flank : CCCGGGCTCCAGCGCACTGGCTATGAGGAGCCCGCGCCCTCGAGCCCGCAGAGCCACGGTCGTATGCCTGCCATGAGACGGAGCCACGTCCTCGACCGACCTAAGCGTCGATCGGCTAGGAAGAGGCGAACTAGGCGTCACCGGAGAGGACTTCTACGAAACGAGTCGGGGGCCTTCACTCCGCAGCACCCCTGCTCACCGTCGGTATGCCTAGGTGCACGACGTGGCCCGCCGAACCAATCACGTCGCACGAGCCCATCAGGCTGTCCCCGGCCCCCCGCTCGCCCCAGTCAGAAGCGCCCACCCACCGCTAGCCCCGCCCCCGCATCCCCGGCAAGCGGTCACGCAACCCCCGCGAACGGGTCTGCCACGTGCTCGCGGCAGGCAGCGCCCCCGCCCCCGCACCCGGAAGCTCCCCTGCCCGGTCCTGCCAACCCCGAAGCTGACCCCGAGGCAAGCCCAGGCGAGGCCCACCGGCCGCCCCTCTCGCCCCACCACAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGGTGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1583-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMR01000581.1 Streptomyces sp. S5 NODE_581_length_4314_cov_120.643_ID_87879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1582 29 100.0 32 ............................. CTGAGGCCCTCGGCGGCGGCGGTGATGGCCAT 1521 29 100.0 32 ............................. TCGGCGTGGGCCGCCTCCCGCTCCTCCGGGGT 1460 29 96.6 32 ............................C TATGCGATCGGCCTGTACTCGCAGGCCACTCA 1399 29 100.0 32 ............................. ACATCACCTCAGCCCACTTTGACCAGGGGCAC 1338 29 100.0 32 ............................. TGCCTGTGGCTGGTCCACGGCCTGTGGGAGCG 1277 29 100.0 32 ............................. TACACCTTCGCGTCGGGCGGCATCATGCCCGG 1216 29 96.6 32 ............................C CGGTTCACGAGGTCGACGACGACGAGGTCCTC 1155 29 100.0 32 ............................. GTTGTAGCGGAGGTGGACCACGTTCGTCCGGT 1094 29 100.0 32 ............................. CCGTGGCACAAGGGCTTCCAGGCCCTCGTAGA 1033 29 96.6 32 ............................C CTCTCCCACATGACCCCGGACCTCTCCGACGC 972 29 96.6 32 ............................C GTGCGAGTGCGACCCGCCCCGCCGGATGCAGG 911 29 100.0 32 ............................. ACCGGTGACGCCGTCTACCACGCCTGGCCCAA 850 29 100.0 32 ............................. CGCGATCACCGGGGCTGGCTACGAGGGGAGGT 789 29 100.0 32 ............................. AGGGGCGCGATCTGATCAGTCCTCAGCGGCGC 728 29 100.0 32 ............................. CCCCGGCGCTCGCGCTCGCGGCGGACCAGCTG 667 29 96.6 32 ............................C GCACCGGCGGTCAGGGTCACGATCACGAGCCC 606 29 100.0 32 ............................. CCCCCGCCGCGGCTGCCACCGCGACGCCATCC 545 29 100.0 32 ............................. CCTTGTCCGAGATCACCCAGCCAGCCGATCAG 484 29 100.0 32 ............................. CAGAGCAGGTCATGCAGCAGGGACAGCGAGAG 423 29 100.0 32 ............................. TGGGTAGGTGACAGCGGCGTGGAACTGTTCGG 362 29 100.0 32 ............................. CCTGATGACCCGCGCTGGAAGTGGATTTACGT 301 29 100.0 32 ............................. ACACCTTCCAGGGCCACACCAGCGCGCTCGGC 240 29 96.6 32 ............................C GCGGCCGGGCTGTAGTCGATCTCCGCCGTCAG 179 29 100.0 32 ............................. GACACCCACGCCGCGCCGTCGTACACCTCCAG 118 29 100.0 32 ............................. CGGCCCTCCGCGTCCCGGCGGGCCAGCGGCAG 57 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCATGACCTCTCGCCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACTGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CACCCCGGCACCTCGCGAGGAGGGCACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //