Array 1 24554-27047 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJG01000008.1 Moraxella catarrhalis strain 91/291/2 NODE_8_length_88454_cov_40.727365, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24554 28 100.0 32 ............................ TAGTATTAATACACTTAACCAAAGCTTAACAA 24614 28 100.0 33 ............................ TTACAAAAAATCACCACAAGCTCAGGCTTGGCA 24675 28 100.0 32 ............................ GCTCAGCTTGCAAACAAAGCAAGCACATCAAG 24735 28 100.0 32 ............................ TTAGTGAAATCAAAGCCATCAACGCCAAGCTT 24795 28 100.0 33 ............................ AATGCTGATGCACCAGCAGCCAGCAGCGACGAT 24856 28 100.0 32 ............................ ACAGCTCATTATTACCACCTGTACCAACATTC 24916 28 100.0 32 ............................ AATAACATTGCCGCCATACCAAAAAAAGAAGT 24976 28 100.0 32 ............................ TGACCAGCACGACCGATGGCGGTGTCCGTCGT 25036 28 100.0 32 ............................ AAACGACTGATACGCTCACCAATCGTTCTATT 25096 28 100.0 32 ............................ TTTTCAACTTCAACGACCCAAGAATCAGAATA 25156 28 100.0 32 ............................ CAATGGACGCTTAAAGTGCAAAGTGGCGGCAT 25216 28 100.0 32 ............................ GTGACTGCAACGGAATTTTTCAATTTTGAAAC 25276 28 100.0 32 ............................ GTGACTGCAACGGAATTTTTCAATTTTGAAAC 25336 28 100.0 32 ............................ AGCTTGGCGTTGATGGCTTTGATTTCACTAAT 25396 28 100.0 32 ............................ CCAAGAGCGTATCGTGTGATGACGATTAGCCA 25456 28 100.0 32 ............................ TGACCAGCACGACCGATGGCGGTGTCCGTCGT 25516 28 100.0 32 ............................ CCAGTTAGCACAACTGGGGCAATTTATATTAA 25576 28 100.0 32 ............................ TAAAATTTCACGCACAGGCTGATAAAGATTTA 25636 28 100.0 34 ............................ ACGAAGCATATCTGTTTTACTGCAAAGGCGGACA 25698 28 100.0 32 ............................ GTGGCAGGACACGCTCGCCTTTTTCAAGATTC 25758 28 100.0 32 ............................ TGCAAACAGCTCATCACTGATTTCAATCACTT 25818 28 100.0 32 ............................ TATTCAGTATTTAGCATTAATAACATTACCCA 25878 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTC 25938 28 100.0 32 ............................ CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 25998 28 100.0 33 ............................ CCGCTCCCCAACCCCACCGAGTGAACAGGTATG 26059 28 100.0 32 ............................ TATTAGATAGCTGTACAATACCTGCATTATTT 26119 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 26179 28 100.0 32 ............................ TGCGAAAAAATCAAATCTAGTCATATTTTTAC 26239 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGATAAATCTTTGCCAA 26299 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGATAAATCTTTGCCAA 26359 28 100.0 32 ............................ GCATTAATGATTGGGTGTTTGAATCTGCCAAA 26419 28 100.0 33 ............................ TGATAAATCTACACCACGATTTTGTAATTCATG 26480 28 100.0 32 ............................ AAGTCTTCCTGATAATCTACAGTGGAAGACTA 26540 28 100.0 32 ............................ ACTTGAGTATGACTACTCAGGCGGATGGAGTG 26600 28 100.0 32 ............................ ATTTTCGCAATCCCAAACCGGGGAAAGTCGCA 26660 28 100.0 32 ............................ AGCTGGGCGGTTAATTGCTCTTGCTTTGTTGT 26720 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 26780 28 100.0 32 ............................ TTGGTTTAGGGCATCAGATGTAACAAATGCTA 26840 28 100.0 32 ............................ ATGAAACACATCAATTGCCGCTGTTGCGGACG 26900 28 100.0 32 ............................ GCCACAAGCCACGCTTCAACGACTGGCGTTTT 26960 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 27020 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================== ================== 42 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //