Array 1 133019-133534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000012.1 Streptomyces sp. NRRL F-5702 contig12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133019 29 100.0 32 ............................. CGGCGCTCGAAGCCGACGTCGAGCTTGGCGAG 133080 29 100.0 32 ............................. CGTTCGACCGCCATCGGCCGCTCGATCTTCAC 133141 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 133202 29 100.0 32 ............................. CAGACGGCGTTGATGCGCCCGTCGAAGTAGTA 133263 29 100.0 32 ............................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 133324 29 100.0 32 ............................. GTGCGGGCCATGCTCATGGGGCGGATTCCGGT 133385 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 133445 29 96.6 32 .......T..................... CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 133506 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCACGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAGACAGGTCGATTCACCCCGAAGGTCCTGCATGGCCGTTTCTCGAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : CTCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 300139-299865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000005.1 Streptomyces sp. NRRL F-5702 contig5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 300138 30 100.0 31 .............................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 300077 30 96.7 31 .............................G TCACCCGGCCGCGCCGGGCCCACATCCGGTA 300016 30 93.3 31 ............C................G CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 299955 30 90.0 31 ...........TGG................ GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 299894 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.0 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Left flank : CCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCCCCGCAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACGGGCAGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCTTCGTCGGGCAGGTCGGGCATACCGCAGCCCCGGGGCCCACGCCTGCGAAAGTCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCCGCTCCTGAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGAGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47045-47195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000067.1 Streptomyces sp. NRRL F-5702 contig67.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47045 29 100.0 32 ............................. GGTATGTCGTCAGGCCAGTCCACCACCCGACG 47106 29 100.0 32 ............................. ACCGCGGCGTCGGAGGAGACGCTGCGGCTGAT 47167 29 82.8 0 G...........T............C.GT | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 ATGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CGGGTCCCCCGAAGCCCGCCTGGGGCATCGCGGACGCAGGGCTCGGCATCCCCGCTCCGGAGGTGCACCGCGGCGACTGCTGGGCGCGGGGTGCGGCCCTGCGGCCGGTCAGCGCGGAGGAGGCCCGTACCGCGCTGGCCGAGGGTGTCCAGGCGTGCGAGGTGTGCCGCCCGGACCGGGTCCTCACACCATGACCCCGCGACCCGGAGGGCGGGTCCTGTCCGTGCGGTGCCGAGTCCGGCTAGGGGGTGAAGCGGGGGACTTGCCCCGCTCGCTCACGCCCTGGAGGCATCATGATCGTTCACTTCGTCGGCGGCCCGCTCGCCGGTCGCGTCCTCACGACCACCGACGACCCGTGGTTCGGGGGCTGGTTCACGATCGAGGGCGCGGCCGGCAAGGCGCTGTACGTTCCGGTCCACCGCGACCCGGTAACGGGAGCCGTCATGGCGGAAGTGAATGAAAACCGGCCGGTGGGGCGGTAGCGTCACAGGTCGTGAAGC # Right flank : TGACCCGGCTGTGAAGGGTTTGGGCGTGGAGACGCCCGGGCCCGTGACGGATAGGGTGCGGGGCAGACCGCGCCGTATGGGTGTGCGGGACAGGTCTGGGTCCCCTGGAGTACGGCCCGGACCCCTGGTGCCGGTGGCCACTTGGCCGCTGGCACCAGGCCCCGGGCACAGCCGTTCAGGGCCAGGGCATGAAGTGGCCGGCACCCGGAGTCCGCTCACGGGGGTGAAGCGGGTGGCACGGGCGCCGGCCGACTCAGGACACAACCCCCGAGAGGGCCGCACCTGCGGGCGAGGGTACCTCTACCCTGAGCCGTAGGCATGTGAAGTAACCATTTCCTGCACCCGTGTTGAGAGGGCCCCTCCGTGATCTGTGCCGGCCGCCGTCACCTCGTGCGCACCCTCGCGGACCTCGCCGCGCAGCAAGGGGTAGGGCTGCAGAGCTATTTGAACGCCGCACCGCACAAGAAGGCCGGTCACCCCGCGCCGGTCAGCAGCGAGGG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1540-1754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000008.1 Streptomyces sp. NRRL F-5702 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1540 30 96.7 31 .........................C.... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 1601 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCAGTAGCCCGTTGC 1662 30 96.7 31 ............T................. AGAGCGTGAACACGGACGCATAGCCCGTCGC 1723 30 83.3 0 ..........T..GT.......G..G.... | GA [1750] ========== ====== ====== ====== ============================== =============================== ================== 4 30 94.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGACAAAATCCCACCCCACATCCCCAGGACAGCAGAGTCCCGATCGCCGGACGCCACGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTGCCCGACGGCCTCTGCCGCACCTGCCACCACGCACACACTCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGCCTAACCCCTGCCCCACGGCTCCCGGTTGGGCAGGACGGGCACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CCGAGCGGCCCGGAGTCCGCTCGGCCCTGATGCTGCGCGCCCGCGGTTCGCGCGACCCTCGCCCCCCGCCCGCAGGCATCTGCCGCCCGCCGCACGGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGGCCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGCGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCAAATGCGGTCATGCGTACGGATAGAATCGCCCGACCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGAC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13485-13029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000092.1 Streptomyces sp. NRRL F-5702 contig92.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13484 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 13423 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 13362 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 13301 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 13240 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 13179 30 93.3 31 C............................A CGCTCACCATCGGGGAAAGGGCCCGGCATCT 13118 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 13058 29 80.0 0 ........-..C.GG......C.....T.. | T [13044] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTAATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTGCGACAGAAGGTCGGATATGCCAGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17105-16771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000092.1 Streptomyces sp. NRRL F-5702 contig92.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 17104 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 17043 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 16982 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 16921 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 16860 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 16799 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCACATCCCCAGGTCGACAGAAGACCGATCGCCGGACACCAAGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAAC # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12867-12592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000098.1 Streptomyces sp. NRRL F-5702 contig98.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 12866 30 100.0 32 .............................. GCTCGGCGCGGGCCTTCTTCCGCTCGGCCTTG 12804 30 96.7 31 .............................G CCGTCCCTGACGACGTCATGACGCAGGCCAG 12743 30 96.7 31 .............................C GGTCCTGCGCGACACGTACGGGGTGACGATC 12682 30 96.7 31 .............................T GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 12621 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 98.0 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCACATCCCCAGGTCGACAGAAGACCGATCGCCGGACACCAAGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCGCACACTCACGGCGGCGAGTCCACCATCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGACCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTGAAAACCGTCTCCCCGTCACCTAAACCCCCAGGTCACGAAG # Right flank : CGGCACGGCTGCGCGCCGCCCTGTGGTCCCGCGAACGCGGGGGCGACCCTGCGCCCCCGCGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37204-38514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000055.1 Streptomyces sp. NRRL F-5702 contig55.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37204 29 82.8 32 TC.A.......A.A............... ACGGTCTGGTTGATCCGGCTCTGGAGCGAGAT 37265 29 89.7 32 ......G..................C..G AGGCTGCCCTCGGTCGTGACCCAGCCGCAGTG 37326 29 89.7 33 ..............T..........C..G CTGCGGCACGTCATGGCGCTGCTCGGCGGGATG G [37343] 37389 29 93.1 32 .............A...........C... TGGTGCCGCACGGTGCCGGACACGGTCCGCGA 37450 29 93.1 32 .............A...........C... GTCGCCGAGTACGTCACCGTCCCGAAGGCGGC 37511 29 96.6 32 .........................C... AGCAGCTCGCGGCGGGAAACGGCAGCCGCGCC 37572 27 86.2 32 .............--..........C..G GGCACGAACGCCGAGGACTGCCCCGCGTGCAA 37631 29 96.6 32 .........................C... GCCATGAGCGTGAGCGCGAGACCGGTGTAGAG G [37648] 37693 29 96.6 32 ............................G TGCTCGCCCGCCGGCATTCAGCCGAAGGAGGC 37754 29 100.0 32 ............................. CAGCACTCCAGCATCAGCCAGCCCGTGCCGGA 37815 29 96.6 33 ............................G CAATCCGAGTCGTGTCCGGTGAGGTGACCTCGC 37877 29 100.0 32 ............................. GTGGCGGGGAGCTTTTGGAACGCTTGGGCGTA 37938 29 100.0 32 ............................. CCCTCTCCCAGCGGTGAGGCTGACCCCCTCTC 37999 29 100.0 32 ............................. AGCCGGGCCAGGTACTCGATGACCAGGCGGGT 38060 29 100.0 32 ............................. GCGTCACCGGTCTTGCCGACGTCGATGCCGCA 38121 29 89.7 31 ........A......T............G CCCTCGCCGCGCGCGGCGCCGTCGAGCGTGA 38182 29 100.0 32 ............................. TGGTGCGGATGGATCCGGCCCAGCCCGCACGC 38243 29 93.1 31 ........T...................G ACGGCCCCGTACCTCGTGACCGTGTTCGAGC 38304 29 96.6 32 .........................C... AGGTGGGCGAGTTCTGGGAGTGCCAGTCCTGC 38365 29 100.0 32 ............................. GCTGGCGTCGGCCACACGGCAGGCACGATCAA 38426 28 93.1 33 .......................-.G... CGCCGCGTCGTGCAGCTGCACGACGACGAGCAC 38487 28 93.1 0 ..............T........-..... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 94.8 32 GTCGTCCCCGCGCCCGCGGGGGTAGTTCC # Left flank : CACCGCCACCGGCAACGCCCGCACCATCCCCACCCCCGCAGCGGTCACCGACCTCTACCCGCTCACCACCTACGACGGCGACGAAGACGACCTCGTCACCCGCCTCGGCGCGGACAGCCTCCGCCTTCTCCCCACCTACACCACCCCCAACGGCCAGCCATACCTCGACGCCGCCTGCACCCGCCCCCTGCCCACCCCACCCCCCGGACACGACCGACTCGACCGCCACACCGTTGCCGCTCTCGTACGCCTCACCGTCGCCTGCCCCAGCACATACCTCCCCGCCGACGACCCGCACACCAAACCCCCCGCCAACTGGTCCCACACCCCCATCGCACGCGACCTCCGACTCCTCCCCCACCCCACCACGGCAGGCACACCACAGCCCTACACCGCCAGCAGCCACACCCTCTACCTCGACCCCGAACTCGGAATCGTCCGCACCCCTGTCACACCACGCCGCTAAAATCCGTCCCAGCTTCCGCACCTTGATAGAAGAA # Right flank : CCAGGCCCGCACCGCAGCTTCCCGGCAGGCTTTCCCGATGTCCTGGAGGCCGGAGGTCAGCCCCACAGCTTGCGGGTGAACTCTGCCGCCCACTCGACCCGTTCACGGTGCAGTCCGTCGGGTTCGCACCGGGCTCCCGACGGAGCCTGGCACTTCGGGCACCTGACCTCCCAGGCCTGCCAGGTCCGGGCCGCCGTACCACCCTCGGGCTGTTCGCTCCGCTTCTCCCTGCGTGGCCGCTTCTCCCGTGGGTGTCGTGACGGCCGGGAGCTGCGCCGTCGGACTCTGCGCAGGCGTTCGTCGTGCGGGAGCTGCCGGGTACGGCTGGGGCCGACCCGGTCGTCGTTGTCGCACGGCTTTCCGGACCTGGCATAGCACCGCGGGCATGTTTCGCTATACCAGTCCGCGCGCGGCACCTGTTGGTGCAGCCGGGGTTCGTCCTGTTGCCGGGTGCTCCGGTCCCGGTCGGGGGCCGGTGTTCGCTCCGAGGCAGGATTCCT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40624-41769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000055.1 Streptomyces sp. NRRL F-5702 contig55.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================== ================== 40624 29 89.7 25 .............A.........G..C.. CGGTCCGGCGGTGCCGCCCGGCCCA Deletion [40678] 40678 29 93.1 32 ..............T..........C... AGGACGACCTTCCCGAGGTACTTGTCGAGCAT 40739 29 96.6 32 ............................C GGGTTGCGCTGGCCTGGCGACGGGGCCGGCAA 40800 29 100.0 32 ............................. ATCAAGGCCGGGTCGTCGCTGTCCGCCCGGGT 40861 29 96.6 32 ........................A.... GCCACCATCCGCTCTCCGAGCGCGCTCACTGG 40922 29 100.0 32 ............................. TCGACCAGGCCGACCCGCCGGCCACGCTTCGC 40983 29 100.0 32 ............................. ACCAGCGAGATCGACCTGACGCCCGGCAAGGA 41044 29 93.1 32 .............A..............C CACCGCTCGTACGACCCCGACGCCGCCTCCTT 41105 29 96.6 32 ............................C CCGTGGGACGCTCACGCCCACCTCTCCGAGTT 41166 29 79.3 32 ..........T.TAG..........C..C GCGCTCACCGTCGCCGGGTACCCGGCCTCACC 41227 29 86.2 32 .............A.........G..C.C GGACACGTAGCCCATGCCGACTTCAACAGCCA 41288 29 82.8 115 ........T........A..CC......A GTTCGCGGGCATACTGGGCTCAGCCACTGGCAACGTTCCTGAGCAGACCGCCGGAGCAAAAACGCATGTGAAGGAAAACTGCGATCCTCGCTAGCATTACCGCAGGTCAGCAAGT A,C [41305,41312] 41434 29 96.6 32 ..............T.............. GCCCACAGGGTGCCGCTGGAGGCGACGGCGGC 41495 29 89.7 32 ..............T..........C..C AGCATCGACTGCCGGATGATGATGCTGATGAG 41556 29 79.3 35 .............A......AAA..C..T GTCAGAGGCGGCGCGTAGTACGAATGGAAAGGCGC 41620 29 82.8 32 .C..........TA...........C..A CGGGAGGGACCACCCGGGCCAACGACCTTGTA 41681 29 89.7 32 ...........A..T..........C... ACATCGACGCCCCACCGGAGGCCCCAAGACTC 41742 28 82.8 0 ..............T......T..-.A.C | ========== ====== ====== ====== ============================= =================================================================================================================== ================== 18 29 90.8 37 GTCGTCCCCGCGCCCGCGGGGGTAGTTCG # Left flank : ATCGGCGCTGCTGACGCTGCGGGCCCGCCGGCCGCAGACATGGGGCTGGCCGTCGGGCCCGGGGTGATGGGCGAAGTGGCAGACCCGGTCGGTGTAGAGCTTCGTCGTCAGCCGACCTCCGCAGCCTCCCAAGAGAAGCCCGCACCAAAACGAATCACGTTTGTGGAGGTTGCGGAAGGCGTCTAGCTCGATGGCCTCCAGCGGCAGAACGAGCGGCTCCTCGGAATCCGCGCCGCCAAGCACCGCCGTCTGGATCTGCCGCCTGTCACGCGTCACCGAACCCACCCCTCTCCTCAACACAGCGTGACATCCGACCCCTACATTTCGCAGCCGATCACCGTGTTTGCCCCGGCACGCAGAGGCGATCACGCTGTACGGCCCAGCCGCCGGGGGCGCGGCCGCCGCAGGGTTGATGGTGGTCAGGCCGACGCGTTCGGCGGCGAGCCGTTGCAGGGCCCGCGCGCGGGATACGTCGCTGGGCCGGACCCGCTCGCGTCCCG # Right flank : CCCGGAGCACGCCGACCGTCATTCTGAGGGCGCACGTTGTGCCGGTGTACCGCCCTGGCAGGGGAATTCGGCGCGTCGCTTGAAGCGTTCCGTGCTCTTCGATATAGATCGGGGAGCTATGAGGTTGGTCAGTCCGATGCTCCGGTGACTCGCCAGGAGCGTAGGCGGTCGGCTACGTCGTAGACGGTCAGGCGTAGGGCCTGGATGTTCATGATGAGGTCGCGCCAGGGTTCGTAAGCTGTGTCGATCGTTTCGCCGGAGGCTTCGATGTAGGCCGTGGCGACGCCGTAGGCGAACAGTTCACTGCGGACCGGGAGTGGTCGCAGGAGCACGATTTGTTCGAGGAGGGCGGCGGCGCGCCAGTAGGCGTCGGGGGTGCTTTCGGTGAGGCTGGGTGTGTTGACGCGGTGGCGGGCGACGGCGGCGACCAGGGCGGAGTAGTCGCGCACGGTCAGTTCTTTGCCGAGGAGTTCCTCTTGGCGGTCGAGGAGCCAGCGGAT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.43, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42727-45851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHD01000055.1 Streptomyces sp. NRRL F-5702 contig55.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 42727 29 79.3 116 T..................CCT....C.A GCTCGCGCGGCATACTGGGCTCAGCCACTGGCAACGTTCCTGAGCAGACCGGCGGAGCAGAAACGCATGTGAAGGAAAACTGCGATCCTCGCTAGCATTACCGCAGGTCAGCAAGT AA [42744] 42874 29 100.0 32 ............................. TCGGTGTCAGCCTGGGAGCTACCCCCGCAGGC 42935 29 96.6 32 ............................T CCTGATCCACGCGACGACCCTGCACCGCGAGC 42996 29 96.6 32 ............................G GGCGGCCAGGTGTGGGCCGCCGCCTCGAAGGT 43057 29 96.6 32 .......................G..... TCGCTCATGCTCCGGCCTCCCAGCCGATTCGC 43118 29 96.6 32 ............................G AAGGTGGAGGGGAGGCTGTGGGACCACCGGGC 43179 29 100.0 32 ............................. GCCAAGGCCGTGGTCGCAGAGCTGATCGAGAC 43240 29 86.2 32 .............AT........G..C.. GGGAGGAGTTGGCCGAGGAAGGGCACCGGCTT 43301 29 93.1 32 ..............T..........C... TGCCGTAGGGTCAGTGCGAGGCCGCACAGGGC 43362 29 93.1 32 ........T.......T............ TGGAGGAGCCGTTCGGGGTTGCGGCGGACGAA 43423 29 96.6 32 ............................G ATGGCCTTCGGCACCCAGCAGCAGGACAAGGC 43484 29 96.6 32 ............................G TTGCCGCCGGTGAAGACAGAGGCGAACGCGTC 43545 29 100.0 32 ............................. TCGGCGACCAGGCCGAGGTCGTTCACCCGCCA 43606 29 100.0 32 ............................. TCGGGGTCGCAGACCTCGGGTGCGCTCATGTC 43667 29 93.1 32 ..............T.............G ACGTGCTGGGCTCCGAGGGTGGGGTCGAAGAG 43728 29 100.0 32 ............................. GCCATCGTGCGGGCCACGGCCGGACCGCCCTT 43789 29 100.0 32 ............................. GTGCTCGCCTCGGTCCTCCAGTTCCAGCGCGA 43850 29 93.1 32 .........................C..G TAGTCGGCGCGCGCACCGGCCGCGTTCGGACC 43911 29 89.7 32 ..............T........G....G CCGGCGAGCATGCGGCGGTGCCGCCCGGCCCA 43972 29 75.9 32 .....G......T....ACA.....A..T TCGAGGATGTTGCAGAAGGGGTCTTGCGCCTT 44033 29 93.1 31 ..............T..A........... GTCCGTCGGCTTCATCCGGACCGACCTCCCC 44093 29 89.7 32 ........T.....T..........C... GCGACGCAGCCGCCCGCGATGGGCACCACGCA 44154 29 100.0 32 ............................. CCGGTCACCCGGGCCAGCTCGGCACGGACCTT 44215 29 89.7 32 ..............T.......C.....G AGCACCATGCTCGTGGTGTGGGCGGGCTGCTA 44276 29 93.1 32 .......T.................C... CGGGCGTTCCTGCGGTCGTCCTCCACGATCTT 44337 29 93.1 31 .........................C..G CCGCCCGGACCTGCGCCCGTCCTTGAGTCCT 44397 29 96.6 32 .........................C... CCCGACTCGCCGCGGCACTGGCTGAAGGTCGG 44458 29 79.3 35 .............A......AAA..C..T GTCAGAGGCGGCGCGTAGTACGAATGGAAAGGCGC 44522 29 79.3 32 .C..........TA.........G..C.A GCACTGGTTGACGATGCCGACGCGCGCGCCCA 44583 29 69.0 93 .C.........A.T......CA..C.GGG CTCACCACTGACAGCAGTCCTGAGCACGGCGGAGCAAAAACGCATGTGAAGGAAAACCTTGAGCCTCGCTAGCATCACCGCAGGTCAGCAAGT 44705 29 69.0 32 A...C..A.A.A.A.........G..C.G GCGTTGCCGCCGTCGGTGTTCCGGTCGGTGAT 44766 29 75.9 32 A...C....C.A.A.........G..C.. GCCAGGTAGGTGCCGTCGGCGGTGTCGCACCC 44827 29 79.3 32 A..........A.A.........G..C.G GTGCCGAGCGCGCCTACCGCCTTCGATGGATC 44888 29 82.8 32 A..........A.A.........G..C.. ACCTACGAGATGCCGAAGGAGCTGACCTGATG 44949 29 82.8 32 A..........A.A.........G..C.. CCCATAAGGCCGGGGGCCCTGCTCCGCACGTA 45010 29 79.3 32 A..........A.A.........G..C.G CGGGCGGGGGCCTTCGTGCTGTGCTCCGCTCA 45071 29 82.8 32 A..........A.A.........G..C.. GCTCTTCAGGCTGGTCCAGCCCTTCGCCTCGA 45132 29 72.4 32 A..........A.A.A....A..G..C.G ATCAAGGCGCAGATCGCGCACCTCACCGACGA 45193 29 82.8 32 A............A.........G..C.G TTGTACGCGATGTCCGCGTAGCCCTCGGTCTT 45254 29 89.7 32 ..............T........G..C.. CCGGCTCTGGAGCCCGGCGACGTCCTGCGAGT 45315 29 89.7 32 ..............T........G..C.. TTCGCCGGGGTCAGCTTCGGCGCCCCGAACGC 45376 29 86.2 32 ..............T........G..C.G CGGGGCCAGAAGATCGCCACCGTGGGTTCGAC 45437 29 93.1 32 ..............T..........C... GTCAGGGAGTCGAGAACGGCCGACTCCTTGCG 45498 29 89.7 32 ..............T..........C..T CCGCGGTAGTCGGTACCGCCGTTCAGCCCGTG 45559 29 82.8 112 .....................C.CAAG.. AGCTCGCGGGCATACTGGGCTCACCACGGACAACCATCCTGAGCACGGCGGAGCAGAAACGCATGTGAAGGAAAACCTTGAGCCTCGCTAGCATCACCGCAGGTCAGCAAGT C [45581] 45701 29 86.2 32 A............A...........C..G CGGTCGACGCTCATCTTCCAGCCGCGCTGCTC 45762 29 89.7 32 A............A...........C... GAGCTGCGGCCGGGGAAGGGCGGGGCGGACGG 45823 29 89.7 0 A............A...........C... | ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 48 29 89.0 37 GTCGTCCCCGCGCCCGCGGGGGTAGTTCC # Left flank : TTTGCCGAGGAGTTCCTCTTGGCGGTCGAGGAGCCAGCGGATGTCGACGTGGAGGTCCAAGGGTGTCAGGCCGCCCGCTGGCCGTGCTGCGGGAGTCCGCCGAAGTCGCGGTCGAAGGCTTCGGCGATGCCTGGGCGGGCGACGGCGGTACGGAATGCGGTGGTCGCGTGGCCGAGCGCGAGCTGGTTCTCCTCTTCCAGAGCCAGGGCAGCGAGGTAGCTTTTTACGCTCTGGCCACGCGCGGCGGCTATAGCCGCGAAACGGTCGCGTGTTTCCGTGTCGATCTTGACAGTTGTGTCAGCCATACCCTCAGCATACCCGGAGGGATACTTTCCGGAATATCTAGCTGTTGGTGGGAGCGTTCGTCACCGGCCCGGGAGACACAGCGGGGCCCGCAGGGAACCAGAGGCCGAAGAGCATCGTGCCGGCGCCGATGATGAGCGGCGCGGTCCTGTGCAGCGTGGAGCACCAGCTTCTCCGCCGTCGCGGCTGGGCTGCCC # Right flank : CAGGACGAGGGCGATGGCTTCGCGGTAGCCCTCCGGCGCCTCCGTCCGCGCAGGCTGCCGGGGTGCGGCAGCGGGCTGCGGAGCGGCAGGGGCGGCGGGTGGCCGGGTGTCACCGGGCGGCGGCGAGGCGAGTGCGGCCGGGCGCAGAATCTCCAGGCGCCGGACGGTGTCAGGGCCGACGGTGTTGTTGACCTTGGTGGTGATCTGCTTCTGGTGGAGGGTCAGTTGGGTGCGGTAGGCGGGGGTGGCGGGGCGCAGATGCAGGGTGCCGGTGGCGGCGTCGAACTGGACGGCCTCCACCTTCCCGGCGAGTTCAGGTGCGATGGCCGGCCACTGATCGATGACGCTGCCCGCCGTCGCGGCCGCGGCCGCCGGGGTGGCCCAGCCGCGCTCCGAGACCATCCGCGACAGGGCGTCGGCGAAGGGCAGCGGGTCGCGGCCGCCGCTGCGCCGGGTCCGGGTGGTTGTGGTGCGGGTGCGCTTGGGCTGGGGTGCGCTCT # Questionable array : NO Score: 4.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //