Array 1 8125-7362 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSH01000048.1 Nocardiopsis listeri NBRC 13360, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 8124 30 100.0 31 .............................. GCGCGCGGACAATGTCGGCGTCCCGCTCCGG 8063 30 96.7 31 .............................C CCAAGGGCTCGGGGATGGGCATGCCGCGGTA 8002 30 100.0 31 .............................. ACTGCCCCTGCCGGCCGGTCAGGGCGACCGG 7941 30 96.7 31 .............................T CGCCCGCCTCGTCCAAGACCACGAGACCGCC 7880 30 96.7 31 .............................G TTACGCGGCCATCGCGCTGGACCGGGTCCGC 7819 30 100.0 31 .............................. TCAACTCGTAAGCGTTGCGGCCGGTGACGTC 7758 30 96.7 31 .............................T ACCGGAGCAACCACCACCAGGGGCCCGAGGA 7697 30 96.7 31 .............................T GCTTGTCGGGGTTCTTGCGCGCGCGCACGTC 7636 30 96.7 32 .............................C GTCTCTGAACAGGGGCGGGACCGCCACCGCGG 7574 30 100.0 31 .............................. AAACCGGTGATGCGCGACCAGGCCGAGGAGA 7513 30 93.3 31 .........................C...C GGATCGTTCGCCCCGCGTATTACGCACTGGA 7452 30 100.0 31 .............................. CGAAGCGCTCCAACTCGAGGTTGATCCAAGG 7391 30 83.3 0 C.............T..........GG..G | ========== ====== ====== ====== ============================== ================================ ================== 13 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : AGCAGGAATCCATGACGCACCCTATCCCCGCGCCCCGACGTCCGGTGGACTTTCAGCCGAACAAGTCCCGCTCTGTTTCTCCGGATCCGGTGTGCGCTGACTGCACGCATCGCATCTGCCGTGCTGAGCGAGCCCAGAAGCTCCCCCGACTGGGCGGGCGCCGCTCCGAGTTCGCCCACGAACACCACCAGGCCACGCAAATCCAGGCCTGCCACCCGCGACTCCTGATCTACTTCGGAGAAGCAACCCAATCGTTCTGGGTGGCTTCTCCTGCCGGGCTGTCCGAGGCCGGCTCTTTCGATGAGTTGCTTGTTCACGTGTGGAATCTGTCCGGGTTGAGCCGTCTCGCTCCTGAACGGGATTCACGTTCTGGTGCCGCCTTGTCGGCTACCGTAAGGTCAGGCTGAAACGTAGTTCGGGAAAGGGTGTCTGGTTTGTCTGTTTCTCAACTAGTTGCAGATTCGGGCCCTCACGCCAGATGAACTCACAGGTCAGCGAGA # Right flank : GGCATCACCCCCAGGCAGGAGAACCAACATGAGTACCACGACCACAGGAACCACCGTCAGCGATATCCAGACCGGTTGGGTCGTGGACTTCTGGCTCGACCCCGCCTGCCCCCTCACTCGCCATACCGCCCGTTGGATCACCCAGATCGCCGGCGAAGTGCCGCTCGAAGTGAACTGGCGCGTCATGAGTCTGTCGATCCTCAACGAACACCGCGACGACGATCCTGAGGGCGATCCCCATGGCTACCTCTGGATCCCCGCACGCGTCGCGGTAGCCGTCCAGACCAAGCACGGACACGACGCGCTCGGTGCCTTCTACGACGCGCTCTGGACCGACCCCGATGGCACCGAAAGGCAATGGCCCGGTGAACTCGATGCGGCGCTGCAACGCACCGGTCTGCCTGTGGAACTCGCGAAGGCCGGCACATCCACCGACTACGACTCCGAGCTACGCGCCTCCCACCACGACGGAGTCGATCGCATCGACGCCGAGATAGGGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11868-10618 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSH01000048.1 Nocardiopsis listeri NBRC 13360, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11867 30 96.7 31 .............................A GGGTCGACAAACCCTCTTGGCCCTCGGCAGA 11806 30 100.0 31 .............................. TCCCTCATCCGTCGCGCTCCACCCCTCTTCA 11745 30 100.0 31 .............................. CCTCCGGGGGTGACTCGCCCTCGACCACCGA 11684 30 100.0 31 .............................. CGCCCCACCCCTTTTATCGCCCCTTCGAGGG 11623 30 93.3 31 ............................TG CGGCCCGCGAGACGGAGCTGTCGGAGGAGTT 11562 30 100.0 31 .............................. GGCGTGAGGTGGAGAACCGGCGACTGGTGAA 11501 30 96.7 31 .............................A AGGCCTACCAGCTCGGTGGCCGGTAGTCCGG 11440 30 96.7 31 .............................A TGCACAGCTTCTTGCGTGCGTGCTGCCTGGA 11379 30 96.7 31 .............................G ACGCCGCGGCATGACCACCGCGATCATCAAG 11318 30 96.7 31 .............................G GAGGCGGACGGCCTCGTAATTCCGGAGGACG 11257 30 96.7 31 .............................G GCCGCCCCACCCCGCCACCGCAGGAAGGAAC 11196 30 100.0 31 .............................. GCGCCATCGACATCGCGGCCTCTTCGACGGT 11135 30 96.7 31 .............................T CGGCGGGTTTCCCCGTCACGTCCGCCCACGT 11074 30 96.7 31 .............................T CGCCCGCCTCGTCCAAGACCACGAGACCGCC 11013 30 96.7 31 G............................. GCACAGAGCCGCCGGCCGCCCCCGAACACAA 10952 30 100.0 31 .............................. GTGGCGGGGCAGCTCGTTGATCGGGACCCTA 10891 30 96.7 31 .............................A GGACAGGAACGCGGCAGCGTCGGGGATGGTG 10830 30 93.3 31 .........................T...G CCGTAACCGCCGACGTCGCCGACCTCGGGAG 10769 30 93.3 31 .........................T...G GGGTCGGGGGTCCTCCGGTACGGGAGAACCC 10708 30 93.3 31 .........................T...A CGGTGCCTCGGGACCCGATGATCGTGGTGGG 10647 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 21 30 97.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : TGCGTACTGGACTCCCTTGCCCTTGCTTATCGACGAGCCGTGCGCCAGGCCGTCGCGCTTTCCGGCCGGGAAGTCGAGGTGGTGCACGTCGTCGGGGGAGGGGCGCGGAACACGTTGCTGTGCGGGCTCACCGCCGAGGCCACCGGATTGCCGGTGGTGGCGGGCCCGGCCGAGGGAACGGCCGTGGGGAACCTGTTGGTGCAGGCCCGTGCGGTGGGTGCCGTTGAAGGGGGATTGTCCGAGCTGCGTCGGGTGGTCGCGGATTCGTTCGAAACCCACACTTACCGGCCGGAAGGAGAGAGTGTTGTCTGGGAAAGGGCTCAACGCTTCCTCTGGCCGGAGGAAGCGCGGTGATCGGTGGATTTCCTGGTCACCTTGTGCCCGGAGGGGACCTGTGTGACTCTTTCCGGAGCATGAAGGAGGGTGGGTGTCTGTTTTGTCTGTTTCTCGACTAGTTGCAGATTCGGGCACTTGGCGTGGGTAAACCCGCAGGTCAGTGA # Right flank : TGAAGTTGTGCGTGGTGCGTGGGTCCTGGCCACGAAGAGCGTTGATCAGTAACCTGAAACACAATCGGTCCCCGCCACTATGATTGGCGGGGACCGATTCTGTTCAGCGCTAGTTCGTGCGCAGGCTACGCAGGAGAGCGGCCCACTCTTGGGCTTTGAAGCCCAAACATCCGGCCTCGCGGTTCTGTGTGTCGCGTATCGACGTGATGACTCCCTCGCGGACCTCTACACAGTCGCCAGAGTGGCCGCTGTAAGAAGATTTGTGGTAGCCGTCCGGAGTATTCACTCAATTTCCTTCCGCCGATCGAAAAGATAGCTCTTGCTCGCTGAAGGAGACAGTGCGACCGCCATCAACGAGTTGAACCTACCGGTGGCGTCCGCGACCACCTGTGGATCATTGTAGATCTGGCCTGTCTGCGCGTTTTCTGAGTACAGGACCGAGTCGACCGCTGACAAGGCGAGGACGGTGAACCCTCCCTCCATCGCCGAGTAAGCGCCCT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59345-61876 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSH01000009.1 Nocardiopsis listeri NBRC 13360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59345 29 100.0 31 ............................. GTGGGCATCGCGATCCTGCCCACCGATCCCG 59405 29 100.0 32 ............................. GACGCTTGGGAGGCTGCGGCCACCTGCTCAGG 59466 29 100.0 32 ............................. TCCGCAGATCCGTCACGGCACGCGACCCCGAT 59527 29 100.0 32 ............................. CCCCCACCCAGGAAGGGTGGGGGCCGAGGTCA 59588 29 100.0 32 ............................. CCGGCGATGATCAGAGCCGCCGGGACCAAAGT 59649 29 100.0 32 ............................. CCATCGACGACCTGGACCTGGGGGCGGTGCTG 59710 29 100.0 32 ............................. CGGCCCGCGCCCTACACGCCCTGTGCGCCCAC 59771 29 100.0 32 ............................. GTCATCGCCCGAACCGTGGCGGGAGCGCGGAC 59832 29 100.0 32 ............................. CGCCCGACCCGCGTCGGTGGGGTCGAGCGCTT 59893 29 100.0 32 ............................. CGGGTGAGTTGTCACGAAGGGTCGACGGCGTG 59954 29 100.0 32 ............................. TCCGGAGGGGCGTTCTCACAGCGTTTCGCGAC 60015 29 100.0 32 ............................. GGCGACACCGGCGCTTCAGGGATGCCGGCGCC 60076 29 100.0 32 ............................. CCGTTCGACTTCTTCGGGGTCCATCTCCAACC 60137 29 100.0 32 ............................. GTCCCCCACGCTTGCACGCATGAGCTGATGTT 60198 29 100.0 32 ............................. GTGGTCATCGTGGTGTTCCTTTCGGTGGGCCG 60259 29 100.0 32 ............................. GGAATACGACATGACCACCATCCACAACACCG 60320 29 100.0 32 ............................. AGCCGCCAGCGCGCTCACTCCCTGATCACCGC 60381 29 100.0 32 ............................. GGACACCAGTGACCACACGAACCGCGCCTTCC 60442 29 100.0 32 ............................. TCCATGAGCGACGGGCAGTGGACCTTCACCCC 60503 29 100.0 32 ............................. ACGCGGGGCCGCCCCACCACACACCCACCCAC 60564 29 100.0 32 ............................. CGGAGTTTGATCCGATTCCGATGATGCGGTGG 60625 29 100.0 32 ............................. GTGTTGGCGCCCGTGTTGGAGACCAACCCGGG 60686 29 100.0 32 ............................. GCCTTCGACCAGAACCTGTTCACAGAGTGGCA 60747 29 100.0 32 ............................. GGACATTAGCTTTTGCGTCCGCTCCGCCATGT 60808 29 100.0 32 ............................. CGATCCTGCGCGACGCGCTGATGCGGGCCGGC 60869 29 100.0 32 ............................. GACGCCATCGACCGCATGGTGGCCCGGTGGAC 60930 29 100.0 32 ............................. ATCAGCGTCAGGATCGAACGCGGCTCCATCCA 60991 29 100.0 32 ............................. TACAAGCACCTCGTCGGGGAACAGGTGGTCAT 61052 29 100.0 32 ............................. CCTATGAACTGTGCATCACGCACGGTATTAGG 61113 29 96.6 32 ............................T ACTTGACGACGGCGGTCTCGGCGGTGGTGCCG 61174 29 100.0 32 ............................. AAGACCACCAACCCCGAACCGCCGATCGAACC 61235 29 100.0 32 ............................. TCCGCGGCCACCACCGATTTGCCGACCGAGGG 61296 29 100.0 32 ............................. CGCCGGGGTCGAAGCGGTTGGTGTGTGCCAGG 61357 29 100.0 32 ............................. CAGACACGGCAGTGGCTCCGGCGGTGGACAGA 61418 29 96.6 32 .........................G... ACGGGGTGAGCGGCGACCGTGCTCCCACTGGA 61479 29 100.0 32 ............................. AACCGCGGCGGTGGCGGTGACGGCGGGTTGGA 61540 29 100.0 32 ............................. GATGGACCTGTAGTTACGCATGGTGGACGGCT 61601 29 100.0 32 ............................. TCCCTGGTCATGTCCGGTACGGGGGACGCCCC 61662 29 100.0 32 ............................. GAAGAACCGAGGGAGCCAGTGGGATCCCATCG 61723 29 100.0 32 ............................. CCGGGCGACGATGAACACGCGTTCTCGCCGGT 61784 29 96.6 32 ............T................ ATCCGCAAAGGAGGCCGGCGATGACCCCGCTC 61845 29 82.8 0 ............T...........TT.AT | CG,G [61862,61869] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.3 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTGGTCTTCCAGCCACCGGCGGAATTGGCCGCCGGGACGGTGTTCTTACTGATGGCGGCCTTCCTGGGGCTGGGCACCGGGGGCGTGTTCGCCCTGGTCGCGCAGCTGGTGGAACCGGCCCGGGTGGGTACCGTCACCGGGCTCGTGGGAGCCGCCGGTGGTCTGGGCGGGTACTTTCCACCGCTGGTCATGGGTGTGGTGTTCCAGGCTTCGGGAGCCTACACCTTCGGGTTCGTGTTGCTGGCGACGGTGGCGTTGGGGACGGCCGTCTACACCGGTGTGGCCTTCCGCGACCGCCCCAAGGTCGAGGCCGAGGCGTAGCGGTCGTGGGGTGGTGGGTGGAGCCCCGCCCACCACCCCACGACCTGGACACGGAATCAGTGGTCTCCCTGAAGTGTGGTGTGCAAGCATGGGGGAGCGGCGGCATTGATCGGCCTGAACCCGGGTCGACTGGAAGGTAACGCGGGGGTAACGGCCCGCGTTGTCGCAGGTCGTTAACT # Right flank : TGAAGTGCGGGTAGTGCCTGGCGGGCGACTGATTCGGGGGTCGATGGCGATGGCCGGGTCCCGCCACGCCGGGGTGACGCCTGAACCGTGCCGTGATGGGTAACGCCCGATACACAGGACACGACCAGAAACAGGGGGAAGCATGACCACCACGCACACCTCGCACTCGGGCCTCGTGCTGCCGGGGCTCGGGTTCGGTACGTACAAGCTCAATGGAGCGGAAGGCGTCGACGGGATCTCCCGTGCGATCGCCAAGGGGTACACCCTGCTCGACTCGGCCTTCAACTACGAGAACGAGGGCGCGGTGGGCCGTGCGGTTCGCGCGTCGGGCGTCGACCGCGACGGCCTGATCGTCACCTCGAAGCTTCCGGGCCGGCACCAGAAGTATGACAAGGCCATACGCACGATCGAGGAGAGCGTCTACCGGACCGGGCTCGACCACCTCGACCTCTACCTCATCCACTGGCCGAATCCGAAGCAGGGACTGTACGTGCAGGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 67941-69741 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSH01000009.1 Nocardiopsis listeri NBRC 13360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 67941 29 100.0 32 ............................. AACCGTGATCGGTTGGCCGGAGTCATTCGGTT 68002 29 100.0 32 ............................. GCGGCGCCGGTGCGGGCCACACGGGAGTGGGC 68063 29 100.0 32 ............................. CGGCTCGGCCCCTGGGTTAGGTGAGTGTCACC 68124 29 96.6 32 ............................T CCAGGTGGCCCCACACCCGGTGCACACCATGC 68185 29 100.0 32 ............................. GTGTCGCCCCGCGCCAGCAGGCCGGCCCAGAT 68246 29 100.0 32 ............................. TCGGACGCGGCAATGACCATTCCCGCCGGGGC 68307 29 100.0 32 ............................. CGGCGCCTGAGCCAATGCGCCGGACTGTCCGG 68368 29 100.0 32 ............................. TTCCCCGGTAGAGGACGCGGGCATGGTGGCCC 68429 29 100.0 32 ............................. GGCGAACATGCCGCCGAGGGATCGCAGTTTGC 68490 29 100.0 32 ............................. CCCGGGGCCGCCCCACCACACCCCGTCAGGCC 68551 29 100.0 32 ............................. GCCCGTGAGCTGGTCGGACAGGCTGGCGTCCC 68612 29 100.0 32 ............................. GGCTCACCCCCGGCGAGGGGTGGCTCGAGGTG 68673 29 100.0 32 ............................. GTCCTGGAGCGTCTGGCGGCCTGGATGAACCC 68734 29 100.0 32 ............................. GCGAACATCATGGCCACCCCGAAGGTCCTAGA 68795 29 100.0 32 ............................. GCGGCTGGTCGTCACCGAAACCGGGACGGCCA 68856 29 100.0 32 ............................. ACATCGCACGGCTCCGCGCACACCTCGCCTTG 68917 29 100.0 32 ............................. TTCCCACCAAAGTTCCCAGTGGGAACCCCACA 68978 29 100.0 32 ............................. GTGAATGATCACTTCGGCCCCGTCTTCGTCAA 69039 29 100.0 32 ............................. TCGTATTCCTCTCCCTATATGGCGTCCTCGTC 69100 29 100.0 32 ............................. GAACACCACATGACGCACGAACACGCCCCGGA 69161 29 100.0 32 ............................. CCGGGTGTGGCGGCTAGGACGGCGGCGGCCTG 69222 29 100.0 32 ............................. CCCGGCCAGCACCTGGGACTGGACGTTCTGGC 69283 29 100.0 32 ............................. CCTGGGGTGCTGGTGTGGACGAAGACCTCCTG 69344 29 100.0 32 ............................. GCGGTGGGGGCCCTGGCCGCCCTGGCCGACAC 69405 29 100.0 32 ............................. GTGGTGGGCGGTCCCCTCCAGGGCCGCCCCCA 69466 29 96.6 32 ...........A................. GGGACCGCCCGACCGAGGGGACCGCCCGACCG 69527 29 100.0 35 ............................. AAGGAACGCGCCGCCCCACCAACACCCACCCACAT 69591 29 100.0 32 ............................. TTGGCCAACGACATCTCCGACGCCTACGGCTG 69652 29 100.0 32 ............................. GCCGGTGGGCTGGACCTGGACAAGGTCGCCGC 69713 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= =================================== ================== 30 29 99.7 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GTCGTCCCCCGAGCCGAGGTCGATCGCTGGACCGAGATCGAACCCGCGCTGCTGACCAGGTGCATGGAGGTGTCCCAGGCGATCGGGCAGGGTGTGAGAGCGGCTTGGGACGCGCCTCGCGCCGGGGTGGTGATCGCGGGTTTCGAGGTTCCGCACATGCACATCCACGTGGCGCCGGTCTGGGACCTGTCCGACTTCGACTTCACCACGGTGGAGGAGCAAGAAGACCGGAGCGTTTTGGAAGCGGCCGCCGAGAAATTGCGCACGGCCCTCCAGGAGTTGGGCTTTCCTCACGCCGTCCCACCCCGGGTCTGACCCCCCCATGGTGCCAGGCGAGCGTGGATGCTGTTCTTGCCTGCTCGCTCAGCGACTCTATGAGCCGCTGCCTCGGGCCGAATATGGGAGCATGGCGAAGACGAAGGTGTGGTTCCGGCCAGGTTTTCACATCGACCGGGGCATAACGCGGAGATAACACTCCGCGTTGTTGCAGGTCGTTAACT # Right flank : GGGCCCGACGTCTCTTTCACCCAGAAGAACGGGGTGAGTCCCCACACCCGAGAAGGCGCGAAACCCTTTCGAGTCTCGCGCCTTCTCCCTTATTCAATCGGACCGGATGGTCTTCAGCTGCTATCCCGCGGATTCTTCCTCAGGAGGTGGCTCTGGAGCTACAGGGAGACCGGGAATATCCGTCTCCTCTTCCACTTCCACCGGCGCGAGGAACTGCACGAGCTGTAGCCCGTCGAAGTCCACTACCTGTCGGCGGCGTTCCCCCGCGGTGAGGATCACGAACCCCTGCTCGTTGTCGGCGACGTGCAGACACACCGCCATCCCCTCACCCACGGTCTCCCGCACCGCAGACCACAGCTTCTCCCGCACCCGCGCGCTCATGGTCCCCACGTACAATCCCGGCCCCGGTTCCACCATCCATCGGGACAGAGAACCCCGCACCCGATCGGGAACGGCCGTCGTTGAAATGACCACCATTGTCCCCATCAGCCGATGTCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 79068-80132 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCSH01000009.1 Nocardiopsis listeri NBRC 13360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79068 29 100.0 32 ............................. GGGTCACCAACGAGGCCACGTGGGCCCGGGTG 79129 29 100.0 32 ............................. TTTGGGTTGACGGTCATGCTGTCAGAGCTTGC 79190 29 100.0 32 ............................. TGATCGACGGGATAGGATTGGCCGCACTCCAG 79251 29 100.0 32 ............................. CCCAACTGCCAACAGCCAACCTCACCCCCGGG 79312 29 100.0 32 ............................. TCCCAATACGCAGAGGCCGCCGGAATGATGGG 79373 29 100.0 32 ............................. CTCAACGACGAGGACGGGTTTCCTCGTCGGGG 79434 29 100.0 32 ............................. GTCAACGCCTTGGCGCCGGCCGACCCCTTCTT 79495 29 100.0 32 ............................. ACTCCGCCCTCGGGCCGCGACATCACGACGAT 79556 29 100.0 32 ............................. TGCGTGCGCGTGGCGCATGTCGGGGTTTTCCG 79617 29 100.0 32 ............................. GCCCGCCCGATCACGCCCATCACCGCGGCGAC 79678 29 100.0 32 ............................. CGTCCCCGGTTCCGAACCAGGGTGAGCACGGT 79739 29 100.0 32 ............................. GGAGAGGCCGACCCCCACCTGCACGCCCACAT 79800 29 100.0 32 ............................. ACGCTGCGGCCGTGCGGGCTTCCACGCGGTGA 79861 29 100.0 31 ............................. CTCGACGGCTGACCGACCCGGTCGTCTACGA 79921 29 100.0 32 ............................. ACCGACGGCTCAAAGGTCGTACAGACCGTGTC 79982 29 100.0 32 ............................. GGTCCCGCCGTCACGCAACGTGACGGCTTCTT 80043 29 100.0 32 ............................. GACACCGTGTGCACCATCGTGGGCGCCGGTTC 80104 29 93.1 0 .........................GT.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCGTGGCCGGTTCGGTCCGCCTGGCGAGGGGTGTGCGGATAGCTGGACAGGTCCATGGGGATCTGCTCTTGGAACTCGCGGATGAGCTTGCCCGTGTCATGACATCCAGCCCAGAACCCGGCCAAGGAACGGGCGTGGGCATGGTCAGTGCCGAGACCGTGGCTGATCCGCGCCTTGAGGCCGGGGGAGAGGGCGCGGTCCCAGAGCACCAGAGTCGCGGCCGTGGCGTCGAGCGCGTGGCAGGCGTAGGGGTAGCGCATTCCGCGTAGACCACGCTCTTTGGCCCAAATCCGCAGATCGATGTAGGAAGGGTGGGTAGGGGGAACCTCGGTCATCCTGGTGAGCTCCAGGGGGCTGTGGGAGCATGAATGAAGACGACGTTAAGGCTAGGAACAGTGTTCTGACGGTGGTTTGTGAGCTTTGGCCGACTCCGGCCAGGCGGTAAACCGGCCAGAGTATAACGCGGAGATAACGGCTTGCGTTTTTGCAGGTCATTAACT # Right flank : GAACGCTGCCAGGAGGAGGGTGTTCCGACCCGGTGTCTCCACGTGCTGCTTCCGCTTGAGCGACTACCAGGGCAGCTCGCCGAATTCGTCATGTTCGGTCAGGTCGAATTCCGCTGAACCGATGAGTGAAGATGAACCGATGAGCGAACCCGAAGGCCCACAAACCTCCGAAGACCCCGAAGGCACTGACCGGAACGGCGATCAAGCGGTGCTCGGCGAGGTGGGCGTCCGGTTGCGGTATCTCCGTAAGCAGGCGGGCCTGACCCTGACCGAATTGGCGCAGCGGACCGGGATCACTCCGAGTACCCTCTCGCGATTGGAGACCGGCAGGGTCCAGCCGAACCTGGGACAGTTGCTGCCGCTCTCACGGGTCCATCGGCTCCCGATGGACGAACTCGTGAACGCACCCCGGGTGGGTGATCCGCGTGTGCACCTGCACCCTGTGCGCCGCTTCGGTCTGACGTTCGTCCCGCTCATTCGGCGTGCCGGTGGAGTCCAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //