Array 1 17011-19919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAILXN010000006.1 Vibrio cholerae strain ISF-208-6 Contig_6_338.041_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17011 28 100.0 32 ............................ ACCGAGCTGGCTTCCGCTTTGATGGCAGACCC 17071 28 100.0 32 ............................ TTCATAAGTCTCAGCTTCAGTGGCTAGGATTT 17131 28 100.0 32 ............................ TAACTCGACAAAGCAGCTGGTCGTTAAGTCAT 17191 28 100.0 32 ............................ ATGCCGCATCTATCTCAGTGATCGAGATATTT 17251 28 100.0 32 ............................ TACCGAATCAAAGGGGGTGAAATTGCGGTTGT 17311 28 100.0 32 ............................ ATACGCTGCTGCAGATCTCGCACTATGTAATC 17371 28 100.0 32 ............................ TTCATCAATTACCGCGCCTTCTGGCAGCTCGT 17431 28 100.0 32 ............................ CGCTTGGCGCGAGGTCACCAGAATGCGCGTCA 17491 28 100.0 32 ............................ TTCTTCGACGTAGTAGGCCACTGCAGCGCCGT 17551 28 100.0 32 ............................ TGACCATGCGAGCAGACATCGGCGGCGCAAAG 17611 28 100.0 32 ............................ TCGACAATACGAGCGTCAGAGTCAAGACCTGT 17671 28 100.0 32 ............................ TGAGGTTACTGCAATCCACGGCATTACTAACG 17731 28 100.0 32 ............................ GTTTGGAGAGTTGAGTTTCATCGACTCGTTAT 17791 28 100.0 32 ............................ ATTTTGAGCATCGATGATTGACACCTCGACAA 17851 28 100.0 32 ............................ GTTATTGGCTCACTCGTTCGTGATGGAACGAA 17911 28 100.0 32 ............................ TTACTGGTTGAGCGACCGCCAAGGGGGCTGAT 17971 28 100.0 32 ............................ AAGAATGGTAATAAAGGGGCAGATTGTTAAGC 18031 28 100.0 32 ............................ TATTCCGGCCATTTCAACCGGAAACTTGACTG 18091 28 100.0 32 ............................ ACTTTGAGCCCGAGCAAAGCTTTGCAACTGCG 18151 28 100.0 32 ............................ TTCTACAATTTCGGCTGTTGTCGCCGTCAAAA 18211 28 100.0 32 ............................ GATAAAACCTAGTACAATATTTGAGCTTTACA 18271 28 100.0 32 ............................ ATTATCTGGCCCTGACGCAGCGCGAGCGATAT 18331 28 100.0 32 ............................ CTGCTGATGTTGTTGAAAGTCTAGAGAGACAA 18391 28 100.0 32 ............................ CTACGACACAGGCTACCAATTCGCCTCTATTC 18451 28 100.0 32 ............................ TTCCCAGCGCTGCTCGACGTTGTTGTACACAT 18511 28 100.0 32 ............................ TGAAAAATACAGCGTTGGATTTTTCAGGCGAA 18571 28 100.0 32 ............................ TGTACTGCGGTTTCATCCAGCCCGACCGATTG 18631 28 100.0 32 ............................ TCTGAGTATTCCAGTACGTTTTTGATGTACTC 18691 28 100.0 32 ............................ AGCAGCGACTCGCTCAACTGTTTCCTTTGTTC 18751 28 100.0 32 ............................ GCGATTGCGTCAGGCGTAAGGTTAGTGAAGTT 18811 28 100.0 32 ............................ ACTTGGACAAAAGCAACGACCAAGACTTTATC 18871 28 100.0 32 ............................ AGCTAAGCCAGAGTCGCCCCAGTGCGCTCCAA 18931 28 100.0 32 ............................ GCTTACCACGGCCAAGATTTCAACGCTAAAAC 18991 28 100.0 32 ............................ ACGTTTCTGATGTGGCAATACTTAGCGTAGCA 19051 28 100.0 32 ............................ ATTATGGCTATCAATCAGGGTAAACTTATTAT 19111 28 100.0 32 ............................ ACAAATCAAGGGATGCGGTTAGCGTTTCTGAA 19171 28 100.0 32 ............................ CGTTGGTCGGGGCGCTGCCCGGTACTCAGTGA 19231 28 100.0 32 ............................ GTGGACATCGTACGGCGATGTTGGTGCCCGCG 19291 28 100.0 32 ............................ GCCACCGCCTTTAAGTAACCCGCATCGAGTAG 19351 28 100.0 32 ............................ GCCTAAGTCGTGACGGCATCCGCTTTGCTCGC 19411 28 100.0 32 ............................ ATCGCGGAGCAGGACTTACTACTTTTTCATTT 19471 28 100.0 32 ............................ TAATTCAGTCTCAGTGATTACGGCCTCGATAA 19531 28 100.0 32 ............................ TGTAACATGCGAAGAGGGCGAGTATCTGAATG 19591 28 100.0 32 ............................ TTACGGCGAAACGCGGTGATCGCATCCTGGCG 19651 28 100.0 33 ............................ ATAATAAGACGGTGCGAGCTCAAGCGGAATTAC 19712 28 100.0 32 ............................ ATACCGCACGCTTTGTACGCCGAGTCGAGCCA 19772 28 100.0 32 ............................ AAAAACAGAACTAAAACTCAACGTGTCGGTAC 19832 28 100.0 32 ............................ ATGCGAAGAGACAGAAAGATTGCCCAGATGAA 19892 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATTGCAGTGGCTCCAAATTTACGAGCACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53090-51981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAILXN010000034.1 Vibrio cholerae strain ISF-208-6 Contig_34_145.596_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53089 28 100.0 32 ............................ TTAATTGAGTCTGAGGTGAAACAAATGATTTA 53029 28 100.0 32 ............................ AAATACTAAACCCTGAAACCAATACTTGTGAC 52969 28 100.0 32 ............................ TTAATTGAGTCTGAGGTGAAACAAATGATTTA 52909 28 100.0 32 ............................ GTCTCGTCATGGTCAGTTTGAGTCAACTCTCT 52849 28 100.0 32 ............................ TGCACCCTTACGAGCACCACCATGAGAATGAT 52789 28 100.0 32 ............................ ATTTTACACTAGCCATAGAATGTACCCGTTTC 52729 28 100.0 32 ............................ ATTGACGCTAAGGGCATCCGTAGAACTGCAAA 52669 28 100.0 32 ............................ GGCTGCATAAGGTGGCTGTCCCTCTTGTAAAC 52609 28 100.0 32 ............................ TAGCGAGGGGGTTGAGTGGCGTAAGCGTATCG 52549 28 100.0 32 ............................ GCCCAAATCCAAAGCCAGAAGCATTAGAAGAA 52489 28 100.0 32 ............................ GCTTCTTGCTCGCGAGTGCTGAATTCTTCCTC 52429 28 96.4 32 ...........T................ ACCAAGCCCGAACCGCGAGATCGATTTCATTC 52369 28 96.4 32 ...........T................ CCTCAGTGTAAGTGCATTCAGTACCGGTATAT 52309 28 96.4 33 ...........T................ TCATTGATGAAGCTCAAGATTATTTTCCTCCTC 52248 28 96.4 32 ...........T................ AGATAAGAACCGCAATAGCTCATCAAGATCTA 52188 28 96.4 32 ...........T................ AGACAAGGCCAGTGTTTGCGAGGTTCTGCTCA 52128 28 96.4 32 ...........T................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 52068 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 52008 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGCACAAAAAAACCGCCAATCGGCGGTT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //