Array 1 50-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYW010000047.1 Listeria seeligeri strain FSL L7-0177 NODE_47_length_709_cov_1.580696, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50 29 100.0 35 ............................. ATAGGAGATACCTTGCAACGCACTTATTATAAGAA 114 29 100.0 34 ............................. AGATATGGGTGCGAGAGGTCACTATGTTGACTCC 177 29 100.0 36 ............................. ACCTTTCTGTGCAATTACTCTGATGATGTCATCATT 242 29 100.0 37 ............................. TTGTAATAGCTTGTAGAAGCTTTCAAAGCAGGAATCG 308 29 100.0 37 ............................. ATTATTATTGAAGCTGGTATACAGATAATTATGGCGC 374 29 100.0 37 ............................. ACCGCCAAGTAGGAGTTGTAAACACTTGTCTCGCCTA 440 29 100.0 36 ............................. AGAGGCATCACCCCCGTTCCTGGAGATTTAGCCACC 505 29 100.0 35 ............................. TACTGAACCATACCCCGAACTTTTAACAACATGGT 569 29 100.0 37 ............................. ATCGAATGCTTTACAACTATATGTGAAAGTTTTCAAA 635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TGAAATGTAAATGTTGGAATTTCGGATTTACTAGTTTGTATGATGACCGG # Right flank : TTGTACGTTGGATAGGGATGGTCATATGACTGACTCGTTTTAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 28967-29445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYW010000012.1 Listeria seeligeri strain FSL L7-0177 NODE_12_length_91852_cov_69.537586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 28967 29 100.0 35 ............................. ACTAAAAAAGAACATATGTACGAAAGGAGCATGAG 29031 29 100.0 34 ............................. AACAGTGACACCCCAATCATCAGCAAGAGCTTTC 29094 29 100.0 37 ............................. AACATTACCGGTTTTTGAACCGCAACGATGAGTTGTT 29160 29 96.6 34 .....................G....... TTAATTATTGAAGCTGGAATCGAACTCCTTTTCG 29223 29 100.0 37 ............................. CAAGTTAGTCGGCTCATTTTAAAATGGTTAGCGAAAC 29289 29 100.0 34 ............................. CATTTCATCCAATTGATTCAATAATAAATTATTC 29352 29 96.6 36 ............................A ACATCGAATTAGATGGATTTATAGTGACCCCTTTTA 29417 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GAGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGATTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 35692-36565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYW010000012.1 Listeria seeligeri strain FSL L7-0177 NODE_12_length_91852_cov_69.537586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 35692 29 100.0 37 ............................. CTCCTAACCAATCCAGATTTAATATAGTGCTGATCAC 35758 29 100.0 37 ............................. CTTGGTCGAGGAGATTCAAAAGGATGTTTTTAGAAGT 35824 29 100.0 34 ............................. AAGGCTTTTAGTATCTTGTCAATAAATCCTGTTA 35887 29 100.0 35 ............................. AGGGTTTCAAGGAAGAACACGGAGAAAATATCAAG 35951 29 100.0 35 ............................. AAAAGAAAACAGGCATGGGTTAATAAAAAATATGG 36015 29 100.0 35 ............................. AAGCCAAACAATGCCAGCAACTAACAAGGTAATTC 36079 29 100.0 41 ............................. TTTTTTTAGCAGCATTATCAACATCAGTATAAGAGTCTTCT 36149 29 100.0 35 ............................. CCATATCCTATTGAGACTAGGAGCAAACGCCATTA 36213 29 96.6 35 .......................A..... ACAAGTGGCTTAATATAATACGTTGGTGCTATAGG 36277 29 100.0 36 ............................. TAATCAGAAATTTTATAAAAATTATCGAAAGTTTTA 36342 29 100.0 36 ............................. TCAGCAACCAATCCAAAATGGATTGATAGCATCAGT 36407 29 100.0 37 ............................. GAATTAGTAACACAATTAGATCCAACTTCTATTACCC 36473 29 100.0 34 ............................. CAACAGCAGATGACTGAGTAATCTTTTCGTTCTC 36536 29 86.2 0 ........C....C..A...........G | T [36562] ========== ====== ====== ====== ============================= ========================================= ================== 14 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTCCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 45178-46443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYW010000012.1 Listeria seeligeri strain FSL L7-0177 NODE_12_length_91852_cov_69.537586, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 45178 29 100.0 36 ............................. AAAATCAAAAGCTAAAGTTATTCTCGCAAGTGCTGC 45243 29 100.0 37 ............................. AAGAATATGTGGGACTCCGTGAAGCAGGAGCGAGTTC 45309 29 100.0 36 ............................. ACAGTAGTTGTGAATGACCAGTTACTGAAATCACGA 45374 29 100.0 35 ............................. GAAGTTATGTGACCTGATTGAGGAATACTACAACG 45438 29 100.0 36 ............................. AACACAAGGTGACAATTTACAAACACAATTCGACAG 45503 29 100.0 36 ............................. ATTCTTCAATCGGAACTCCAAAATATTCGAGTACAA 45568 29 100.0 37 ............................. TGTTGATATTAATACCTAATCCTGACCAGTTCATGAC 45634 29 100.0 38 ............................. TTTTATGAAAAGTTGATTCAAGATACTTTTTCGAATGC 45701 29 100.0 36 ............................. CTAATCAAGCTAATCGAGACTCTCAAAAAGAGGTCA 45766 29 100.0 35 ............................. AAGTCCGAATCAGTGATTTGGTCTTCATACTGCCT 45830 29 100.0 38 ............................. TAACTCCGTTGCCTTGCTGCTTAGATAATTCCATTCCT 45897 29 100.0 36 ............................. TACACCACCTTTGAAGTGGAAAGTTCCAAGGAAGAC 45962 29 100.0 35 ............................. AATAACTTCTACTCTGTCACCTTTTTTAAATTTCA 46026 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 46091 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 46155 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 46220 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 46285 29 96.6 36 ............................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 46350 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 46415 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGGGAGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATCGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //