Array 1 427676-428801 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLUS01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain CFSAN044975 CFSAN044975_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 427676 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 427737 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 427798 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 427859 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 427920 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 427981 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 428042 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 428103 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 428164 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 428225 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 428286 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 428347 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 428408 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 428469 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 428530 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 428591 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 428652 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428713 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 428774 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445060-447166 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLUS01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain CFSAN044975 CFSAN044975_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 445060 29 100.0 32 ............................. GCGGACTCCTGCCCCTCTTTGAGCCCGTCGAT 445121 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 445182 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 445243 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 445305 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 445366 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 445427 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 445488 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 445549 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 445610 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 445671 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 445732 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 445793 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 445854 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 445915 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 445976 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 446038 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 446099 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 446161 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 446222 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 446283 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 446344 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 446405 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 446466 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 446527 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 446588 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 446649 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 446710 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 446771 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 446832 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 446893 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 446954 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 447015 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 447076 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447137 29 89.7 0 A...........TC............... | A [447163] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //