Array 1 332964-334455 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZG01000002.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 06-0711 NODE_2_length_458702_cov_1.69405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 332964 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 333025 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 333086 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 333147 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 333208 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 333269 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 333330 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 333391 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 333452 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 333513 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 333574 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 333635 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 333696 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 333757 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 333818 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 333879 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 333940 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 334001 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 334062 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 334123 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 334184 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 334245 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 334306 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 334367 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 334428 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 350712-352207 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZG01000002.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 06-0711 NODE_2_length_458702_cov_1.69405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 350712 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 350773 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 350834 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 350895 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 350956 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 351017 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 351078 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 351139 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 351200 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 351261 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 351322 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 351383 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 351444 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 351506 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 351567 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 351628 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 351689 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 351750 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 351811 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 351872 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 351934 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 351995 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 352056 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 352117 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 352178 29 100.0 0 ............................. | A [352205] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //