Array 1 48184-47725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARH01000009.1 Lactobacillus crispatus strain ATCC 33820 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48183 29 100.0 32 ............................. AGTTGCCCTGATACCGAACGGGATCCGTACCG 48122 29 100.0 32 ............................. CAAAATCAACTAAAACGACCGTAGAATCGCTC 48061 29 100.0 32 ............................. ATTAGTGTCTCTGCCGGCATTTTCACGATGAT 48000 29 96.6 33 ............................A CTATCTTTAGGAACATAACCTCGCTTGATCATG 47938 29 100.0 32 ............................. AGTTGCCCTGATACCGAACGGGATCCGTACCG 47877 29 96.6 33 ............................C CCCCTAATATCATCTTTTTTAATTGAAAACCAA 47815 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 47754 29 86.2 0 .............A...........AA.A | C [47729] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTGGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACC # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATAATATGGCACGTGAACTAAAACAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 549-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARH01000022.1 Lactobacillus crispatus strain ATCC 33820 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 549 29 100.0 32 ............................. CAACAGTGGCAGAATGCCTTTAATGATCTTAA 610 29 100.0 32 ............................. AATATGGACTTATAAACGCTGGTCTAATTCTA 671 29 79.3 0 ......................CT.AATA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTATTCTCCACACATGTGGAGGTGATCCT # Left flank : AATATCACACAGCAGAAGAACTCTTCAAGCAATATATTTCCTCATAGCCTAACTGTTGCACTTAATTTGACAATTCAGGAAAAAATTATTTTGAAGGTAATGAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAATATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCTTGCAAAATCAGAATCATCTAATTCTATGCCTATATATGCTAACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 917-645 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARH01000068.1 Lactobacillus crispatus strain ATCC 33820 contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 916 28 100.0 33 ............................ TTGTCGATACTGAAAATTATTTTGACGAGGTCG 855 28 100.0 33 ............................ CAAGTCAAAAGTACGCAAACAGCAACCCTAATT 794 28 92.9 33 ............TA.............. CTTGTTGACGCTCCCACATCAAATGCAAAATCA 733 28 92.9 33 ............TA.............. TGAGCCTTCCTGACGGCTGACTACGTGACACTA 672 28 78.6 0 ............T.A........T.AGT | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.9 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTA # Right flank : TATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTACCAGCGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTCCCGGATTTAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACGTATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //