Array 1 8013-8226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573958.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8013 29 96.6 34 ............................T CGACAACCGGGGGACACTGTTCCTCCCGGGCCGT 8076 29 100.0 32 ............................. AACATCCCGAAGTCGAAGGAGTCACCGAACAC 8137 29 100.0 32 ............................. CATTGTCCCGTGACGGGCGCGACTGATCACGT 8198 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 4 29 98.3 33 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CCGGCCGTGCGGGCAGCCGAGTCGGACACCCTGGTGCTCGCCGACGGGTTCAGTTGCCGGACGCAGCTCGCCCAGGGCCTGGGGCGGGACTCCTCGCACCTCGCCGAGGTGCTGCGGGACGCGCTGCGGGCGGCGGCAACGCGGGGCGGAACGCCGGCGAGCTGACGGGTCGCGGAGGGCTGGGGAGGCCAGCGGGCGCGAGGAGAGCGGGCTCCGTCCGGACCAGCCCGGGACGAACGCGTGTCGTCGCCCGCCGTTCCCGGCCCGGGAGCAGGACTGCACGCGGCCTCCTCTCCGGGCGGAGCACGGTGCTCGGGGCGGCCAGGGCCGTCGGGGCGCGGCGTGCGACGTGGAGCCTGGGCGTCAACGCGCGGAACCGGTGGCCCTACCAGCTCGCCGAGTGCGGATACCCTGACCGGACGAGGACGCGGCGGCGTGAGGTGCTCGGAAAAGTGAACGAGAACCGAGCGTGCCGCCCCTAACGCCGCAGGTCGGAAAGT # Right flank : GGCCTCCTGCTTCAAGTTCGTGAAGTCGTTGGCGTCGTCCCCGCACGCTGGGGGTGGTGCGGTTGGGTCGGCGAGTTGACGGTGCGGCCGGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCGGCCGTGCGGCCACCGGTACTGTCCTCAGCCCGCCTTGGCCCGTTCTCGGTCGGCTTCCGGGGACCACGGGCTGCGGCCCGTCACCGGTCGGGTCCCGTCGTGGAACGCGGGGCGCAGCGGTTCCCGGTGGCGCAGCGGGCGCAGGCCCCTGCTGATCGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 389478-389627 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573951.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 389478 28 100.0 33 ............................ GAGATGGGGCAGCAGCCCCGGACGGGACCCCTC 389539 28 100.0 33 ............................ GACGACCCTCGCCGCAGGAGTGGCTGGCGCCCT 389600 28 92.9 0 ..................A........G | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GTGCCACCACGCGACGGGACTGAGCGGGAGTAGGCTGATCATCGAGGCCGCAAGGTCAAGGAATGATAACGGCACTCCATTCGCGCTGGTCGCGAAGGGCAAGCCCCGCGCAAGCGGGGGTGAGCCGGTCTGCTTGAGCTGCACGACCTTGGTAGCGGGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGTCGTCCACATCGCCCGCGCCTCCACCGGGGCG # Right flank : GGGTGCTCGACCGCGGATCTGAGCAGGGCGGCTACCGCCGCCACCCGCCGGTGAGCACCGCCCGGCCGGCCCGTTCGCGTCTTCGGTCCGGCCGGAACCGGGATGTCACACGTCCGGAACGCGCGGGCGGCTCATCGCCGTGGCCGCAGGCCCGCGACCAGCTCGTCCGCCGCCGTGTAGGGGTCGGTCCGCCCGGCCAGCACCCGGTCGGCGAGGTCGACCAGCGCGGAGCCGCCCCGCACATCCCCCAGCCGGCCCCGCAACTCCTCGACCGCGATCGCCTCGACCTCACTGGCGGCTCGCCGCCGCCGCCGGGCACTGAGCTCTCCGTGTTCCCGCATCCAGTCGTGGTGTTCGTCGACAGCCGCGACGAGCTCGGTCATCCCCTCCGCCCGGGATGCGACGGTCCGCACGATCGGCGGACGCCAACTCGGCCCCTCCTTCTCCCGGCGGCCCAGGGAGATCATGTGCTTGAGCTCGCGGACGGTCTGGTCGGTGCC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28299-28092 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573964.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28298 29 100.0 32 ............................. TGGCGCTGGCCAGGAGTTCTCATCCTCATCTG 28237 29 96.6 32 ............................C GTGTCAGCCGCCCGTCCCCGACCCGGTGCGGC 28176 29 100.0 26 ............................. CCAGGGCGGACGACTAACCACCGGAC 28121 29 69.0 0 .C.....T.C....AAG......CG...T | T [28110] ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 30 GTCGTCCCCGCGCACGCGGGGCTGTTCCA # Left flank : CTCCCCGCGCACGCGGGGCTGTTCCCTCTGAGCCACCTGTTGGCATCGACGTTCGTGGACGATCCGCTGACCACTGAGACGTTCATCGCGGCCGAAGACGCTGGCCTCCTCGCTCGATCCGGCGGAAACAGCAGACATGATCAAGTCATACCTACGTCACCACCAGGAGAGATGGATCCATGCAGGTTGATGGCGAGTTTGGACGCTGGCGCAAGGCAAGCCGCAGCGGCCCCCAGGTCGAGTGCGTGGAAGTTGGCAGCAACGCGGATCACGTCGCGATCAGGGACACCAAGAACAGGGGTGGAGGAACCTTGGTAGTCGACCATCCGACCTTCGGCGCTTTCCTCACTGCTGTCAAGGACAAGCGCTTCTGATGCGTAGCGGGCCAACCGGACCCACACGCGGCATGGGGAGGGCAGGTCGGGGCGAGAGCTGGGGGTGGTGCAGGCAAAGTGACAGAGAACGTGCGGGTAGGAGTGTAAACGCGCTGGTCAGGAAGT # Right flank : CACGCCTCCTGGGGCTGGGCGCGACTACTTGGCAGGGCGGCGAGCGTGGATCGAGCGATCGGGGTGCGCTGTCGGGCTACCCGGCACCGGGTAAGCATGTCGGGGGACGTGCCTCGCCCGCCCTACACCTCGCCCAGGCCCCGCAGCGCCTCGCGGACCTGCCCTTCGGTCGGTTGGCTCGCGGGAAGCGGGGTGCGGGCGGCCTCGGCGCGCAGGCCGTCCAGGAGGTAGGCGACCTGCCGGCGCCAGGCGTCCGGAGCGGCGTCGGCGGTGGCACGGGCCAGTAGCGCGTTGGCGGCGAAGGCGAACACCAGGTCGGCGTTGGTGAAGTCGGGGCGCAGGGCGCCGGCCTCGTGGGCCCGTCTGACGATCCGTCGCGCGGCCTCCATGCTGCGGCCGCACGCCGCCATCAGCCGTTCCGCGTCCGGGTAGCGGCCGCCGACCACGTCGGCGACGGCGGGGTCGGTGGCCTGGAGTTCGCAGAGCCTCTCGACGTAGTG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32299-33059 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573964.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32299 29 100.0 32 ............................. GTCGTCGCAGGCCACGAGGTCCGCGAGGAGGA 32360 29 96.6 32 ............................G ACCCTCATGCGCGGCCGGATGGTCGAGTCGTC 32421 29 100.0 33 ............................. CCGACGAACTGCCCGGCCTGGTCGTAGGCGACC 32483 29 100.0 32 ............................. GCGTGGGTCCGCCGCGAAAAATCCCGTCCGGG 32544 29 100.0 32 ............................. AGTGCCTCCGCCCTCGCCGCCTTCTGCCGGGC 32605 29 100.0 32 ............................. TGGCCGGCCGGCGGTGTCCGGGCCGAGGACGT 32666 29 96.6 32 ............................G GTGGGCGCGGTCAGGGTGCAGGAGATCGAGCA 32727 29 93.1 32 ...........A................G AGCCGGTTGACGACCCCGATCGCGAGCGCCGC 32788 29 100.0 32 ............................. CATGCCCTCGAAATGATCAAGTACGGGGAGGT 32849 29 96.6 32 ...A......................... CCAGACTTCGCGCTCCCGGTGGGTCCGATGGT 32910 29 89.7 32 ..............T..A.......A... GACCGATTCCGACTCGACATCGACAGCGAGTA 32971 29 89.7 31 ...C.......................TG GCTGGGCGTCTTGGGTTTCCGGCTGAGCGAT C [32996] 33032 28 75.9 0 .....T........-T.C...T...G.G. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.2 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CTGGTCGGGCGAGCCGGGGAATCGGGTGCTGCGAATGACGCCTGCCGGTCGGATGGTGGCGCTGGACCTGCTACCGGCCGTCGAGGCCTTCCTTGCTGAGCTGTCTGGTGTGTCGTCGACGCCCTAGCCTCAGGTCGCTGTGCGACCTGAGCTGGTAGCTCCGCTTCGCCGCCCGTCAGATTCCGGTCGCGGGCAATTCAGGGCAGAAAATGTCCTGAATTCGCCCCCTGCGAGTTCTTGCCTGAGGTCGCGCCCGAGGGACGCGCGCCTCGCGGTGGCTGGGGCATGGGTCGGTCAGGACCTGGGGTCGTGGGCGCAGGGGTAGGTTCGCTAGCAGGACAAGTCGGCTCTGCCGACTGCTTCCTGACTGGACGATCCCGGTGCCCGTGCGACTCGGCGGGAGGCTCATACTGAGGAGGAGACGGAGCGGCGTGGAGCGGAGGCTGGAAGAAGTGAATGAAAACCGGCCCTGTCGCTCGTAACGCCGCAGGTCAGGAAGT # Right flank : CACTGGGACGCACCAGTCGCCGCGAGACCGCGTTCGCTACCATCGGTAGTCGATTGGCTACCCGGAGGCGCCCGGGGAGCTGCGGTAGGGAGCCCGCCCGGGTCTGCCGACGGCTGGGCACGCCTTTGGTCCTCACGAGCAGCTGAGGCCGAGCTGCCCTGGAAAGGAAGGATGCCACGTGAAGTTGCGGGCGTTCGATCAGCTGTTGGCGGGCCTGATCACGACCGACCACCCCGAGGTCACCAACGTGCACTGCTACGGAGAGGACCGTCCGCAGCACCGAACGCGGTTCAGGGTCGACTTCGCGAGCGGCGCGGCCGCCTATCTCTACGTTGACGACGTGGGGGCCGGGAATCCCGCGTATGGCTGCTGACTCGCCCGAGGTCCCCCGGGAGGCGCTGTGAGACTCGATCGTTTTCGTGAGTTGCTCCGCGAACAGTTCGCGGCTCACCCCGGCATAGCCAGCATCGAGGAGTACCAGGTTCCCTCGACTACCGGCT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1344-1892 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573961.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1344 37 100.0 37 ..................................... ATGCGTGGCGAGCCGTGCCCGTCCGGACGAGTCCGGA 1418 37 100.0 36 ..................................... CAGATGGCGTCGATCTCATCGAGGAGGATCGTCGGG 1491 37 97.3 37 ......T.............................. CGCAACTCGCACACCGGGTCACCTGAAGCGGTCGCGG 1565 37 97.3 35 ......T.............................. CCGGCTCCCTCCCTCCTCCTCCGTCTCCGACGCGG 1637 37 100.0 36 ..................................... ACCCCGGTGGACATGGACCCCCAGGTTGACGGAGAC 1710 37 100.0 35 ..................................... GGCATCCGGTCCGGTGTGTCCGGGTCCTGTGAGGA 1782 37 100.0 38 ..................................... CCGTCCTGGTCCCGGACCACCGGGTCATATCCAAACAG 1857 36 97.3 0 ................-.................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.0 36 GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAACCAGTCCAACGCCTGGGTGATCTCGGCCGTCCGCCGAGGTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAACAGTGCGGGTCCGAGCACGCTGGCCGTGTCCGCGATGTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAACGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCCCGGTGAGGATCGCAACGGCGGCCAACTCAACTTGGCGGTGCTGGTAGGCCGC # Right flank : CCTGCTGATGCTGCCTTGGTGACTACCAGGGGCGCGCGTTGCGCCGGTCTTTTTCCTGACGGGACTGCGAGGCTGCGAGGCGCCGGGGCGCCCTCCGAAGGGCACGACCCGGAGCCTCGCGTGTTCCTTCGTGCGGATCGTCGTAGGCGTCAGACCCCCTCCGCTGCCCTCGCGATGACCTCGCCCGCCTCCTTCGGCGGGGTGACCTGCGGATCAGCGGGAAATGCGGCCGAGCAGGGGGAAGGCAGAACGCACACGAACTGATCGCCACCCACGACCACGGTCACCGCTTTCCCGCCCAAGGCGGGCAAGGTGCTGACCATCAGCGATGCCACGGGTTCCGGCCCAGGCACGATCGCCGTCACGACCGCTTCCCCGTCCGCCACCAGCAGGGCACCCGCGACCCGTCGGGCCTGCATCACCGGCAGGCCCACGGGTTCCTCGGGCGCGTGCTCGGGGCGCAGGACAACGCCGAGCCGGCTGGTCTCCACCAGCACGGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Alternate repeat : GTTGCATCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 141820-141548 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573961.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 141819 28 100.0 33 ............................ GCGGTTCGCTACTGACCTGCCGAGGATGACGCA 141758 28 100.0 33 ............................ GATTCGGGAGGACCTCCCGTAAGAGGAACTGAC 141697 28 100.0 33 ............................ GACATCCCGCGAGGCCGCCGTCGCGGACATCCG 141636 28 100.0 33 ............................ GGCGCTGCATCACTCGCACGACGTTCGGCATGA 141575 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GGATCGGCCCCGAAACCGTGATCGCGACCACCGTGCATGCCCTCCAGGTCGCCGACGAGGACCTTCCCGAGTCGGACCACGACTTCAGCGTGGACCTGATCGCCACCCCCGAGCAGGTGATCGAATGCGGCCCGAGGCGACTCCCGGCGGGCCTGATGTGGGAGCGGCTTCCCGCCGAGAAGATCGCCGCCATCCCGGTGCTGCGACGGCGCGCCTCGGACCGACGGAGCGGCCCCGCTGGCCCGGGCGACGGACACCGACCGGGCCACGGATGAGAACGCCCATGACCGACGAGGAGAAGCGTGTCGGCTCCCTGGCCGAGGGGAACGTGACGCAGGCGCGCAAGCGCATCGCGGTTGGCCTGCTGAGCCGCGACGAAGCTGGTCGTCCTGCGCTGGGAGCGAGACGGGGGGCCTACCCCGTTCGTACGACTCCGGGAATCCACACCAACAGAAAATCACAGAACGGTAACGAGCTAACATCAGTGCAGGTCGGGAAGG # Right flank : GGGCTCCGCCGGCTTCCGGGAGTGCGGGGCGTCCGACGGGCTCCGGCCTGAGCGTGCGCCGCCAGCGAAGCTCGCGTGCGGACGAAACCTGTTCGCTGGTCGGGCTCAGGACTCGGGCGCCCTCCCCCACTCCCCAACACGGGGTCCACGTGGTCGATCAGGACGTCACTTCCCGGTCCCTTCTGGCCGCCCAGAGCAGGACGGGCACCAGCAGGAGGGCGAGGAGGCCGCCGGCGAGGGAGAGGACTTCGTAGCCGCCGGTCGCCATCACCACACCGGACATCGCGCCGCCGCCCGCTCCGGCGAGGGAGACGAGCACGTCAATGCTCCCCTGGGTTCGCGGCCGGTTCTCCGGGACGGTCGCGTCGACGACCAGCGCGGTGCCCGAGATCAGCCCGAAGTTCCACCCTAGCCCGAGCAGGACCAGTGCGAGGATCAGCGGGCCGAGCGAGTCCCCTGGGGCGAGCGCGGCGACCACTCCGGCGGCCAGGAGGGTCACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 160828-161162 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573961.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160828 29 100.0 32 ............................. ATGGTTCTGGACGCCCAGAACTTCCAGGACCT 160889 29 96.6 32 ............................T CGTCCTAGACGACCAGGACAACGGTTCGTGTT 160950 29 100.0 32 ............................. CGCCAACCCGAACTTGGGAGTCCGCTGGGGGA 161011 29 100.0 33 ............................. GTGGCGGCCAGCTGGAGCAGGCCTACGATGTCG 161073 29 96.6 32 ............................T CCACGTCCTCCGGTGCCGCGCCGAAGAGCGTC 161134 29 93.1 0 ........................C...T | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : NNNNNNNNNNNNNNNNNNCGTGGGGACGCCTGGTGGAGTCGTTAAGGGCCTGCTGGAGGGCTGTGGCGGGGGGACGGGATACTGTGGGCAGGGAGGATCTGCGGGATGCGGGAGACCGTCGGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGCCGCAGGTCAAGAAGTGTCGTCCCCGCGCACGCGGGGCTGTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCGAAGTCAGGTTCGGGCGAGCACGGCCCGTGCGGT # Right flank : TCACGTGACGAGCGCGACCGACCTCTTGGAGGTGGAGGAATTCGGTGTGCGGCGGGGGTGCCGTTCGCCCGGAGCACAGGTAACACCAGGGAGGCGGCTCCCGAGGTCGCGTCGCCGTCCCGCCTCAGCTCCCAGCGGTCCAACGACTGGGTGACCAGCTCGGGAAGCGCGGCCAGCCAGTCCCTGCCGGCCTCGCCGAAGGCCCGCGCGTAGGAGACGACGAGGGGTTCTGGGACGTGCACCGCTTCTCGCGCACTCATGATGGTTCCTTCGCAGGCGGTGGTTCGTCCCGGGTCCGTCCGAGGGGAACGATCAGTATCGGTGGAAGGCCGCTCACGCAACGTGGCGGCGGGTGGCCTCGGCCGTGTCACGCGCCCCGGGTCAGCAGGGCACGTCGAGCCTGCGTTCCAGTTCCGCCATTCCGGCCCGGCACTCCCTGGCCAGCGCGCGGTGCCCCTGGAACCGGCCGAGGATCCCGAAGGGCCGCACCGACGCCACGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 169183-169332 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573961.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169183 29 100.0 31 ............................. CCCCGTTGACGCCGAGCTGATCGAGTCCTGA 169243 29 100.0 32 ............................. ATGGCCCAAATGCTGGACGTTCCGCCTAGGGC 169304 29 93.1 0 ............T...............T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CAACGCGTTGTACAAGAAGGAGCTGATTTACCGGAAAGGCCCGTGGAAGGGGGTTGCGGACGTCCGCGCTGCTACTGCGGAGTGGATTCACTGGTACAATCACCACAGGCTGCATAGTTGGTGTGGGAATAGGCCACCGTTGGAGTACGAGGAACGACACTGGCGACAGGCCACAGCGGTCTGAACGTACACGAGCGTGGGAGGCACGGCCTCCAACACCACCGGGGCGGTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCACTCAGGCCGGCCTCGCCG # Right flank : TCTCCGTCAGGGTCGAAGACATTCCGCTCGGGCTGGCGGAGCGCCGCCCGCCGCCGGCCTCGGCCCCCGTGCGGGATGGGGCTCCGTCGACGGTGGGTCGGCGGAGCCCCAGGTGGTGGCCCCACGAGGGCGATCCGGTACACACGGGGCACATGATGTACGTCCACGAGGACCTTCCCGCTCACCGCTCGATCCGGGCGGCGCCGAGGAAAGCCCCCGTCATCCCCCGCTGGCCGGTCGTGGCCGTTCGAGGAGGTAAGACGGCATCCCTCCCGAATCCGCTGGAAACCAGGTGGACGCGGAGGGGGCGGTTCCTCCCGAAGACGCTTCCGCGCGTCAGAGTGGAAATCGGCGAACGGTCTCGGGGTGGATGACGAGGCGGACCTGCTCATCCGACATCATCCCGGCGAGTTCCTCGGCGCGGCCCGGGTCGTTGAGGTCCCAGTACCGGGCGGCGAGCCGGGAGCACAGCTCGAGGGCTCCGTCGGGCACCACCTCCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 9801-9571 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573965.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9800 32 100.0 35 ................................ CCCGTCCACGTCGAGCAGGCGGGGCGCCGCCCACG 9733 32 100.0 32 ................................ CTGGTACTCCAACGAGGCTGCTGGCGAGGATT 9669 32 100.0 35 ................................ GCTGGACGCCTGCACGCACGACGGCATCCCCGCCG 9602 32 93.8 0 ............................G..G | ========== ====== ====== ====== ================================ =================================== ================== 4 32 98.5 34 GGTCCTCATCGCCCCTAAGAGGGGTCACAACC # Left flank : GTGCACACCGACCATCTCAGGCCCACCGTTCGACCAGGCACCACAGCGCCCGGCACGTCTTCCTCCGCACGCGAGCCAGCTTTCGAGAAGGCCCCTACGACAGCGCGGAGAGACAACGGACCCCGCTGGGATGCCCCGACCACGGGCGAGGCGCAGCCGCAGGTCCGCGTACCATTTTCAGCGAACCCCCCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCCTCCTCCTGCCGGGCCCACTCGGCACGCC # Right flank : TGCCTCGGCGTGGAGGCGTCACCACGGGGTACCGCCCAGGCTCGCTGGCCCGCTGTCGACGACGATCAGCTTGTCACCCAGGAAGCCGTCCACGTCTGGGCCCAGCCACGACTCGCCTGGTCGAGCACGGTGGAACCTGAAGGTTCCGTTCGTGCTGTTCGCTCCCACGATGCAGCGCACCGCGACGGGCTCGGGCAGCGCACGGACAAGCCGCACGACCTCCAGGGCGAAGCCCAACCCGTGCCGCGACATCCGCACCTGGTCCGCCTCGCTGATCACCGGCTCGCCGTCCTCCAGGCATCCGACATCGACGGGAACCACGTCATCCAGGTGGATCTCGTTCGTCGCGCACTCCCATGCGGTCAGATCCTCGGTAGCGGCGTGGGGTGCGTGAGCACGGGTCGCGCGTCGGGCGAAGACCAGGGCCGGGCCGGCCCGCACGATGCCCTCGTCCAGCACCTCGCGCAGCTCGGGAGCCAACTCCGCCACTGGGGTCGCGC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTAAGAGGGGTCACAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 48828-49159 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573968.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 48828 37 100.0 35 ..................................... GACAGCCATCCCATGTTCGCGTCCTCTCAGGTGTG 48900 37 100.0 40 ..................................... ACGAGGCTGTCCGGCCGCGCATTCGGCCGGCGGCGCCGGG 48977 37 100.0 35 ..................................... GCGGCCTCGGGCGGTGAGCCGGGGGACCTCGTCTA 49049 37 100.0 37 ..................................... GACCATCTTGCTGCGGATCGTCGAAGCGGTGACGGAG 49123 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 37 GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Left flank : GAGGGTCAGCGGCGGCTGCGCAGGGTGGCGAAGATCTGCGAGGGCTACGGGCACCGGGTGCAGAAGTCCGTCTTCGAGGTGGTGTGCCGGCCGCAGGACTGGGTGTTGATGAAGCACCGCCTGGCGGAGGTGATCAACTCCGAGCGGGACAGCATCCGCGTCTACCACCTCGACCGGGGTTCGTTCTCCCGCGCGGAGCACATGGGGGCGTCGCGGCTAGCGCCGCACGAATCGCCTCTGGTGTACTGACGGTGCTTTCCGGAGACTGGACAGGAAGGGCAGTCGTGACACTGAATTCCGCTGGTTCACTCGCAGGCCGGCCGAGCCGGCCCCAGGGTGGTGCGGATCCGCGCCGTGTGCGGTGTGGAGTTCGCGCGGATCGGAAGCGTCACACGACACGCCTGGACTCTCCTAAGCAAATCCCGGGCGTGTCGTCATCTTTGTCTGGTTTGCGGGAAGCTCGTCGCAACACGAAATGGGAAAACCGCTGTTCACGCAGC # Right flank : AGCGCCTTCAGAAGGGCGGCCAGCACCGTCCGGTGCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 282105-281713 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573942.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 282104 28 100.0 33 ............................ GCAGGTCGAACCCCATGCGGCGGGCCGACTCCG 282043 28 100.0 33 ............................ GGACACCTCCAGCCCTCCTCTGGGGCCTGGACC 281982 28 100.0 33 ............................ GGTGACTCGCGTCGCGGCCCCATCCGCCGCACT 281921 28 100.0 33 ............................ GCACCCGGTGTCCTATCCCGCCCCGCGTCCGCC 281860 28 100.0 33 ............................ GCCGGCGGACGTCGTCGGCCGGGACGCTGTCCG 281799 28 92.9 33 ................T..........G GCCGCCACCTGCCGGCCGCATCCGCACCCCCCG 281738 26 82.1 0 .......TT.......T...--...... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGCCGTGGTCGGCGCGGCCAGGTGGCACCGACGGGATGTGCGCTCGTTCGAGTGCCAGGTGCCCCCCTGGATGCCGCCGTCGGACCGCCGCCGGCTGGCCGGAGCGGGGGTGGCGCTGCGGGCGGTGGTGAGGTTCGGGGCGGACGCCGGGCCGCCGGTCGTGCCTCGGCCTGGGCACTGAACTCGAGCGTGGTGCTCCGCCTGCGGGCCGGCGCGGTGGTGCGAGTGGTGGACGGGGACGTCGGTGGGTGTGCCCTGACGGTCGGTCACTGGGGCGGGCGTTGGAGCACGTGGCCGGTGGTGGCGGCGGTACGGTGGGCGGCGTGACGAGGTCGGCGGTGGGAGTCGCGGCGGTCGAGGGCGAGGTCGCGAGTCCAACGGGGACCGACCGCGCCGGGAAGGGGCAGCCATCGCGGGCCGGAGCCCGGCGCCAACGGTGGCGCCGAACCGCACAAGGTCAAGAAACGGTAACGGTCCTCCATTGGTGCAGGTCGCGAAGG # Right flank : GCGCCTCGCGACCGGGTACCCGGTCACCCCTCGGCGGCGGGCAGGGGCGTGTCCGGAGTGATGTTCCGGTCCCGGCACGGGTGCTGGTGATGTGGTCCGCCCGGCTCCCGCTGGCCGGGCGGCACGGAACAGCCCCCGGCTCCGCGCGGAGCCGGGGGCTGGGGTGGTTGTCAGTGCAGGCGGTCGGCCTTGACGGCGTCGACCAGGGCCACGAAGGCGGTCCGGTGCACCAGAAGTGTTCCGCCGTCCCGGTTCTTGGTGTCGCGGATGCCGACGACCTCGCTCGCTCCCGTACCGATCTCGACGCAGTTGGACGACGAGACGGATCGTCGAGGTTTGCGCCACCGTGTCACAGCTCGCCCTCCAGTGCGCGCAGCCGCGTCCGCGACTCCTCCTCCGACAGGGCCACGCCGAGCAGGTGGTCTCTCGTCGCGACCACGGGCGCGACGTCCCGTTCGCTGTACAGCCAGGTGGATGACCGGTAGTGCTCCAGGTGCACG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61852-62146 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573966.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61852 30 100.0 35 .............................. AGTGTGGACATGAGGGACCTCCAAGGACGAAGAGG 61917 30 100.0 34 .............................. CCGTCGTAGCGCTCCCGCTGACGCTGCCGCACGG 61981 30 93.3 38 ..................G.T......... ATGTCCCGGGGCCAGCAGGCCCGGGTGAGGCCCGCCGC 62049 30 100.0 38 .............................. ACCATCCGCACGCGGACCAGGCCATCCCGGATCATCGG 62117 30 80.0 0 ...............G....C..C.A.TG. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 94.7 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GGGTCCAGGACCCGTAGAGCAGCACGCCGTCGAGCCGGGGCTCCGCGTGCGCCACCTCGCGCAGTCGGTCGATGCGGCGGGCGAGGGCGGTCGGTTCGGTGTGGGGCATGGTGGGACTCCTCCCTGAAGTGGACGAACGGGCTCCCACGTCCGGCCGGAGACGGCCCACGGACGCGAGTGGTGGTGACGGTGCGGAACCGTGTCCTCAGGAAGTGCTCATGCGCGGATGGTATCGAACGAGCGATGGGGGAGAGGTGGGCGACCACTACGCTTGAGGCGGTCGAGCACCGGGGCCGATGGGCACCTTCCCGGCGGCCTTCGCCGGTTCGGCATGCTGATCTGGTGGTGTTTCGGGCCGCCGGAAGGCTGGGGAGGAGGCACCATCGAGTGAGGCGAGATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAGAACCGTGTCCGATAGGGTGGTCCAGGCGCCCGCTGACCTGCGACTTTACTCTCG # Right flank : CTGTCAAGGGCCTCGGCCTGTGGTGCTGCCGTCACGGGCGGGGTGGCGCAATCGCACCAGCTGGCCGACGACGAGGTGTCAGTTCGCGTTGCACCTGCTCCTGCTCGGGAATGAGCACCTCGGGCTGACATCGCCAGATGCTCGTACACCCGATGCCCGGTCAGTGAGGCGCCGGGAGGGACTACTGTGGGAAGCGGCCCCGCCACTGTCAGCGAAGGGGACGTGCGGTGAAGCTTGAGGACGACCTCATTGGCACGAGGATTCGACAGATCCGTCACTACCGTGGCATGACCGCGTCAGCGGTTGCCGGGCTTGCGGGTATCAGCAGGTCCTACCTATCACGCATCGAGCTGGGTGGCAGGGCGGTGACGTCCAGGTCGTTGCTGGAAGCGATCGCCACAGCGCTCCGCGTCGCACCGTCGGCACTCACATCCGAGCCGCACAAGACACTTCGACGAGGTGACAACAGCGCTCACGATGTCATCCAGGCCCTGGACGCG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 70601-70992 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573966.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70601 28 100.0 33 ............................ GATGAACGGCCGCAGCCTGGAGACCACGAACGC 70662 28 100.0 33 ............................ GTCCGGGCCGGTCCTCGACGGTGCAGCGCTCGC 70723 28 100.0 33 ............................ GTTGGGCTTGGCCGTCGTGATCCTCGTCCTGAA 70784 28 100.0 33 ............................ GCTCGTGAGCCTGCCCGTGTGGCTCGTGATCGC 70845 28 100.0 33 ............................ GTGGTCCGACACGTTCGCCGGGCTGATCGTCTC 70906 28 89.3 31 ........................CCG. CCCCACCGGGGCACCCGTCAGCATCGTGGTG 70965 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : TGCTGACCCATCTGGTCTGGGTGTGCGCGGTCGCGTTGGTGTCGGTTGGCGCACTGTTCCTGGTGGGCATCCTGCTGGGGTTGGGTCCTGTCAACGGCGACGTGCTGGCCGACTTCACCCGGCTGGTGCTGTTGCTCGTCCTGACCGGTGCCGTGGTGGTCCCCACGTCCTTGGTGGCCACCCTCGGCCGAGGGGCACTTCCCGGGATAGGGGCGGCCATCGCCCTCATCGTGGTGTCCCAGGTGGCGGCGATCGTGCAGCCCGCAACGGCCGCGTGGCTGCCCTTCGCGGCTCCCGCGATCTGGGCGCTGTTCCCCGAGGTGGTGGGTATGGCCCAACTGGGGCTCGTCATCGCCACCAGCGCGGTGTTCTGCGGTCTCACGGTCCACGTGTGGAACCGCTTGGAGCTGGACCGAGGAGTGTGAGCGGGAGTACGGTGCCGCCGGATCCGTCTAGGTCAAGAAAAGGTAACGGGCTCCCGTCGGCGCAGGTCGCGAAGG # Right flank : CCTGGATCCAGAGCTTCGGCCGCGCCCTGGACGCCACCGCCGGCGCGGCACCGCTGCTGCTGCTCGGCGACCTCAACGTGCTCGAACCCAGCCACACGCCGGCTCACGGGGGCCAGTTCGCACCGTTCGAGTACGCCTTCTACAGCGGCCTGACCGACCGGCACGGCCTGGTCGACCTGTTCCGGCACCTGCACCCCGACCGGGTCGAGCACAGCTGGGCACGCCGTCCGGACCTGGGCTTCCGCTACGACCACGCCCACGGCTCGGCCGCCTTAGCCGAGCAGCTCACCGGCTGCGAGTACGTCCACGAGACCAGGGAACTCGCCGGGGACGGCTCCCGGCTCACCGACCATTCCGGGCTCGCCGTGCGTCTTGCGCTGACGCCACCGGCGCGCTGCTAACGTCGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12173-11881 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573973.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12172 30 100.0 37 .............................. ATGCACTCCCACGACCCGCTCGAGTTTCGGACGGAGG 12105 30 100.0 34 .............................. TGGCTAAGAACCGCCAGGGCCGGACAGGGTCCGT 12041 30 100.0 36 .............................. CGCCCATCTCTGCGGCGAACTCACGGGCGTTCGCGG 11975 30 100.0 35 .............................. GCGTACCTGTACGCGGCGACCTGAAGTGCGGTTTC 11910 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCGAGGTCCCCTTCGCCGCACGAACCGGCCGCTGCCGTACGCCAGCGTAGGCTTCTCCCATGCTGGTGAGGACCATCCGATCCGGTGACTCGTTCCTCTGCTGGCGGCCAGTCGCCAGTTCTGTTGTGGACACCGACGGTTGGCTGCTCGTGGAGCAACCAGTGCGGCGCGGCACAACGCGAGGTGGAGCGGACGACAGCGAGGCCCGCTCCGGGAGCTGCCCGTCGCTGCGAGACCGTCACGACGCGAGCCTTGCATGCGCTCGCCCGGCTGCCTGTGTCGCGTGGCCCGCGGCACCCGCCCGCGAGCTCGACATCCTGCGGAGGCCGGGGGCGGGCTGACGGCCGGGCACCGGGCGGGTTGGGCGCGACGCGCACGGTAGGCTTGCGCACGGAGATTTCAGCGAACCCCCCGGGTCAGATGTCAAACCTCAGGTTCACTGCAAAAGCGCCGCCAAAAGCACCGTGCAAGAAGGCCCTGACCAGCGACTTTACTCTCGC # Right flank : AGTGTCGATGCGGCCCTGCACAATCGGGTGGCAGCCCATTCACGCTGCTCCTAAGGAGTTTCAGGCAACGACGAGTGAGGAGATGCAGCGGTGGTCTCCACTTCCCGCACATCACACGATGACCACGAGCAGGTTCACACCGTTCTCATCGCCCGGGAACGGGCCATCCGGGACAAGGATGTGCTGGCGTCGTCATCGGTATACGCGCCCGACGTGACCGTCTTCGCTCTCGCGCCTCCGCTGAGCCTGCGAGGACAAGCCGCGTTCGATGAGGCGGGAACGCGCGCCTGGTACGACTCCTTCACCGGACCCATCGGTCGGCAGCGGCGTGATCTGGTGGTCGAGGTCAGCGGCGACGTCGCCTGTGCCCACTGCCTGGTCCATTTGACCGGGCGACGCACCGACGGCGCCGAGACAGATCTGTGGTTCCGAGAAACCCTCGTCCTGCGCCGCCACGGCGACACCTGGCTGATCAGCCACGAGCACGCCTCGGTACCCCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 29021-28690 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573978.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 29020 38 100.0 36 ...................................... CCGGAAGATGCGCGCGCTCCAGGTCGCCGCGGCGTT 28946 38 100.0 35 ...................................... CTGTCGTGGGCGGTCGCGATCGCCGCCACCGGGAT 28873 38 100.0 36 ...................................... GGTGATGCTCGGCAGCAACGGGTACGCCGCGGCCCG 28799 38 100.0 34 ...................................... AGGGGGGCCTCGTCGAGGTCAAAACGTGGGCCCA 28727 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.5 36 GTTGCGATCCTCACCGGCCCCGGAGGGCCGGTGCAACC # Left flank : GATCCTCACCGGCCCCGGAGGGCCGGTGCAACTCCCCGGTGGGGCACCGACACGTGCGGTGCCCACGCCGAGTTGCGATCCTCACCGGCCCCGGAGGGCCAGTGCAACTGCCGAGGTTGATGAGGTGACCGACCAAGAGGCTGCCGTTGCGATCCTCACCGGCCCCGGAGGGCCGGTGCAACGGCGCCGCCGGCCGAATCCGGGGCCGGATGGCCTCGTGTTGCGATCCTCACCGGCCCCGGAGGGCCGGTGCAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCCCGGAGGGCCGGTGCAACCCGAGGCCGATCTCCGCGATGCAGCGATGGCCGCA # Right flank : CTGCGCGAGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTCCAGGTTACGCGCTCCACGAAGCGCGCAGGAACCAGGCAAAACAGTCGACACGCCCGGGAATTGGTTGGGAGAGGTCAGGCGTGTCGCGTGACGCTTCCGATTCCCAAGCAGGATCATGACCCTCCGACCGAACCCGAATGACCGTTCTCGGGCTGTCCTCACGGCACTGGCGCCTCACGGTACCGGCCACCCCACGGCATCCGGAACCGCGCTTCCGTCGGCGATCCGCGGCTTCGACCTCCCCCGTGCCAGCTACCGCGCATCCCCTCCCCGCCTTCGGTCGACGCGCACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCTCACCGGCCCCGGAGGGCCGGTGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-21.70,-19.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 29339-29891 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573978.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 29339 37 100.0 37 ..................................... GGCAGCCTCTTGGTCGGTCACCTCATCAACCTCGGCA 29413 37 97.3 39 .......T............................. TCGGCGTGGGCACCGCACGTGTCGGTGCCCCACCGGGGA 29489 37 100.0 35 ..................................... CTCGACGAGGCGCAGGACAGCAACCCGTGCGTCGC 29561 37 97.3 0 .............A....................... - Deletion [29598] 29559 37 97.3 37 .............A....................... ACCAAATGTCGATCTCTACGGCACCGCCTGACATCGC 29635 37 100.0 37 ..................................... CAGGGGGGCTGTGTGGAGATCGGCGGCGCTCCTGGCG 29709 37 100.0 37 ..................................... GGCGGCGCGGCGGTCGGCGTGCCCACCGCTCCTTGCG 29783 37 100.0 37 ..................................... CGCGACCTGGAGGGGACGACCCGCCTCGTGCCGGGGT 29855 37 94.6 0 ..............T.........C............ | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.5 32 GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : TGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAACATCCCGGTGGCGGCGATCGCGACCGCCCACGACAGGGTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAACAACGCCGCGGCGACCTGGAGCGCGCGCATCTTCCGGGGTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAACTGCGGCCATCGCTGCATCGCGGAGATCGGCCTCGGGTTGCACCGGCCCTCCGGGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAACACGAGGCCATCCGGCCCCGGATTCGGCCGGCGGCGCC # Right flank : CGACGGGCCACAGGGCTGAAGGTGATCAGCTACGCCCTGGCTGGCCAGGCCGACGCCAGTGCGCGGGTGCTGGACGAAGCGATGCGCCTGCTCTCCCAGCCCAGCCGGGACGACGAAGTCCGTTTGGGGCAGCGCAGCGTCGTCGGCGACGACCTGTACGCGGTCTACCAAACCACCTGCGACATCTACCTCGGTCTCGGTACCGACGTGATCGACGCGCTACAACCCCGGTTGGATGGACTGGCCCGCTCCTCGCCCCGCACGGCCATGATCAGCCGCGCGAAGCTGGCTCACGCGTATGCCAACGCCGGCCAACCCGCCGACGCCGTCCGACTGGCCCGGGAAACGCTGGACGCCCACGACCAGGTCGGCTCGCACTCCGCCTTGACCGAGGTCCGGCGCACATCGCGCGTGCTGCGCCAGTGGGAGGTTCGTGCGGACGTGCGCTGGGAGATAGCCGACCTCGCCCACCGGCTGTCCGGCTGACCATCGGCCAGCCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTTGCACCGGCCCACCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 139543-138966 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573979.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 139542 29 96.6 32 ............................C GACGCCGGCGAGATGCATCGCCAGCTGATGAC 139481 29 100.0 32 ............................. ACCGAGGGGCACGGGCATGTCGGTCATCGGGA 139420 29 96.6 32 ............................A CCATCGACGACGTCCGAGCACGGGCGTCGCTC 139359 29 96.6 32 ............................C GAGGCCTGGTGCTCGGCGATGTCCTGCCGGTG 139298 29 100.0 32 ............................. TTCCCCGGAGCCAGGCTGTCCCAGCCCGAATC 139237 29 96.6 32 ............................T GAGATCCGCGCCGTCAAGGCGCTCAGTACGGA 139176 29 100.0 32 ............................. CTCCTGTCGGAAATCCGGCTGAACGAATCGCT 139115 29 100.0 32 ............................. AGCCCAAGCTGGTTCGGGTCCACCACCTCGAC 139054 29 89.7 32 ...............T......G.....C TCGTCCACAGGGGCGGCCGGTGCGGACAGCCG 138993 28 79.3 0 ...-..........T.....A...C..GT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : ATGTGCCCGGCGCTGGGGTCCGAGTGGAAGGTCATCACGACCTCCGGATTCGCGAGCAGGTGGCGCACCTTGGCGGCGTGCGGCTCACTGAAGACGACGAGTTTCTCCTCCAGGTAGACGAACCAGACGGGGCGGAGTGCTGGCCGGTTGCTGGGGGTCACGGTGCCGAGCCAGAGAACTCGGTCCTCGGCCTTCTCCGACAGGCCTTCCAGGGGCGAACCAGTAGTCATGCCACAACGCTAGGAGTTCCACATTGCTTGAGGTCAAGGTCCTGGTGGTGGATGGGCGCCAGTGCTCCGTCTTCGGCAGACGGCTCCGCCCGGGGTTGGAGGCAGGGGACAGGAGGGGGCAATGCGGACAATGACGAGTGCTCCTGCGAGGCGCTTCCGGTTCGTCGAGACGGTTCGGCGGCGCTCAGGGAACCGGAGCATCCCGTATGGTGACGGAACAAAGTGAATGAGAATCGGTGTGGGCGCTCCTAACGCCGCAGGTCAGGAAGT # Right flank : GATGTTGGCTGCTTCCGGGGGGCTGCCGAGTTCACGCATCGGGCCCCGTCGTCGACCAGCCGCCGTTCGGGTGGGCACGTTCACCGACTGCTGCTAGCCCCAAAGGGTGAACTCTGTGCTGCGTGAGCGTGATTCGAGCTGGCACTCCTACAGTCCTGGCATGGCCGCATGGCACCAGCCCCCATGTCCGGGTGTGGCAACTCTCCGCATTTCTCCCGACCAGGCTCCCCCCACCTCGTGCCGGTGTTGAGCAGGAGGGTCATCTGCCCGTGCGGCAGCATGACCCTGTTCGAGCCGCCCAACTGCCAGCGGCGGTCCTGCCTCCGCCGTTGGACGTGGCTGTGGTGCGTTCCGGCGCTCGTCCTGCTGGTGCTCATCATCCCGCTGACCGTGGCGGTGTGGGGCGACTCCTCGCCCTGTGACGAGGGGTTCCGATCGCTCGGCCCGCAGGTCTGCGTGCGGGAGTAGACGTCCTGATCGCTTTCCACCGGGTTGGTGGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146608-146334 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573979.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146607 29 96.6 32 ............................G ACCTCGGCAGCTCGGCTGACGAGCCTGCTCGA 146546 29 100.0 32 ............................. AACAGGTATGCCGCCAGGGACCAGGGGGCGTC 146485 29 100.0 32 ............................. ACCATGTGGCACTCGTCGATGACCACGAGGAT 146424 29 96.6 33 ............................G TCTGGGGCCTCACCTCGCAGGGCCGGATGTGCA 146362 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.3 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GTCATGTTGTGGAACGAGGACGGGCCGGACGTGCGGGCCGGGGTCTCCTACGGGCAGGACGACGAGTACGACGACGGCATCGACCAGGTCGGGGAGACGTCGTGACCGTGGTCGTGGTGACAGCCTGCCCGGTGGGCTTGCGCGGCCACCTCACTCGCTGGTTGCTGGAGATCTCCCCCGGTGTCTTCGTCGGCGGCATCACGGCTCGGGTGCGCACACTGTTGTGGGGACGCGTCCAGGAGATGGTGAAGACCGGCCGAGCGATCATGGTCTACAACACGGACACCGAGCAGGGGTTGGCCTTCGAGGTGCACGGCCACGAGTGGACACCGGTGGATCACGAGGGGGTCCAACTCATGCTGAGGCCCGCGCAGCGGAAGCGCTCCGCGCCGAAGCAGCGCGCGGGCTGGAGCACCGCCAGCAGGAGGAGGCGGTACGGCCGTGGCCAGAAAAGTGAATGAAAACCCCGGGAGTGCTCCTAACATCGCAGGTCAGGAAGT # Right flank : CACCGCCAACTTCGCCCGTTCGCTGGTCCCGGTCCTCTAGGGGCCTCGTTGGGTGGGTTTGGTTCCCGGGGGTGCTGTCGCCGGTGGTGGCCGGCGGTGGTGCCGTTCGCGCTGGCGTAAGCCGGCCTGACCGGACGTCATCCGTTCCGGGGTCATGGGGGCTGGGTAGCGACATGCCCGGAACCACTGCTCTCGAAAAACAAGTGCGGAGTTGTATGGTGCCAGCATGCGGACGTACGGGGACGCGTGCGGGATCACCCGGGCGCTGGACGCGGTGGGGGAGCGGTGGGCGCTCCCGGTCGTGCGGGAGTTGGTGTTCGGGCCACGGCGGTACTCGGATCTCGCCGCCGCGCTGCCCGGCGTGAGCACGAACATCCTGGGCACCCGGCTGCGGGAGCTGGCCGAGGTCGGGGTGGTGGTCCGGCGGCGCCTCCCGCCACCCACGCCGGTCGCGGTCTACGAACTCACTGCCTGGGGGCGCGCGCTCGAGCCGGTGCTGA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 157140-156684 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573979.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157139 29 100.0 32 ............................. ACCGCCCGCCAGATCGAGCTATCCTGCTGCAT 157078 29 100.0 32 ............................. GACAGCGAGGTGCACCAGTAGTCGTTGGACAG 157017 29 96.6 32 ............................G AGCCTCATTCCGGCGCGGTGTTCTCGGTCAGC 156956 29 100.0 32 ............................. CCCCACAGAGAGAGGCCAGCATGGCTGGAGAC 156895 29 93.1 32 ................T...........G ACGTCGAAAACCATCATGCCCGGACTCGGTGG 156834 29 96.6 32 ............................G TAGCCACCGGCAGTGCTGGTGCCCATGCTGTC 156773 29 89.7 32 .C.....TT.................... GCGGCGGTCCTGTCGAAGTACCGCCTCATCGA 156712 29 93.1 0 ..........T.................G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GTCCCGGGTGGTCCCCACCGCGACCCTGCGGGAAGAGGCGCTCACCGCCGCCACCCGCATCGCCGGCTTCTCCGCCCCGGCGGTGGCGATGGCCAAGGAGGTCGTCAACCAGGCCTTCGAGACCGGCCTCGCCGAGGGCCTGCTCTTCGAACGCCGCGTCTTCCACTCCACCTTCGCCACCGAGGACCAGAAGGAGGGCATGGCCGCCTTCAGCGAGAAGCGCGCCCCCCAGTTCCGCCACCGCTGAGGGAGGGAAGGCCGCCGCACGTCGGACGCGGAGGGCTGTCCGCCGTCCGTGCCCTTGAGGCATCGCGGGCGAACGCGGGAACCTGGGTGAGGTGTCGCTAGGCTTGTTCGGGAGGGAGCGAACGCCGACCCCGCATCCGGGGAGCTGGCCGCCGGCCGCCGTGCCGATCCCGTGTGAGGTTCCCGAGGTGGAGATGCCAGAAAAAGTGAATGAAAACCGGGCCGGGTCGCGGTAAACCCGCAGGTCAAGAAGT # Right flank : GTCCTCGCGCTGGACATACCGTTGGGGACGCTGCCCTCCTCCGCCCAGGAGCTTGCCCGGTCGGGCTCGTCCATGAGCTGGACCCTCGGTGGGTCGAGTGTCGGATGTGGAGCTGACGGGCAACGCAGGGCGCACAGCACTGGAGCCGGCCAGCTGGTCCACGGACGCGGGGACGCGGCTGCTCGTCACCGAGGTGCGGCCAGCCCCCACACGGACCGCTGCCGAACTGCGGCGATCGATCACTCGCTGCTGTGAGGTCCCGGAGTTGGCTAGCCCCGAAGTGGGAAGCCGGGAAAGCGCCTGCGGGGTAACTGGCCGTCTCGGAACGGTTGTCGCGGCAATTCTCCGTCGGGGGCTCCCGTCGTTGTTGGCTCACTGGCCAATCTCCGCAGTCCTCGTTTCCTGTCGGTGCTCGGTGCTAGGAAACCGCTCGGGTCGTGGGGTTCCGGGCGGTTACCCGGAACCTAACTTTCCCAGTCGTGCGCTGGTGATTTTCCATC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82139-81443 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573984.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 82138 37 100.0 35 ..................................... CCGACGCCCCGTCTGGCGATCGCGACGCTGGACCC 82066 37 100.0 36 ..................................... GCCGGGCCGCCCGGCGATCAGTCGTCGTACAGGGTG 81993 37 100.0 39 ..................................... CTGTACATCGCTGGCATCCATGCGATGGGGACGTTGGGC 81917 37 97.3 36 ................G.................... ACCAAGACCGGCCAGGACCTCTGGCCCCTGAAACCC 81844 37 94.6 35 ..............T.G.................... GTGGTGGCTCCGCTGGGGCGAGTACGCCCGGCACT 81772 37 97.3 34 ................G.................... GAAAGCGTGAAGCTGGCCTCGTCGAGGACGAGGA 81701 37 94.6 37 ................G..A................. GTCGACGCGGAGCAGGAGCGCGGCCGGGAAGCCGAGC 81627 37 94.6 38 ..............GG..................... AGTGCCTCGCCCGAAGACTCCCGCGAGCTGGCCCGCCA 81552 37 100.0 36 ..................................... GAGGTCACGCACTTCGTCATGCGGGGCGACTTCGGC 81479 36 86.5 0 ................G....-...........T.GA | T [81446] ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 96.5 36 GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAGTCATTGCCCGAGTTGCCGACCCAGTAGGCGTCGGGTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAACGAAACCGCCGACGAACTCGACGCCGCCGCCCAGGTTGCATCGGCCCTCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGACGTACCGGCCGATGGTGACGCGGTCGCGGA # Right flank : ACTGAGCATGTCCGTCACGATCATGGAGGCCTAGGGGAGTGCGCTGTTCAGGACGATCTCGCGAAAGGTGTCGTCCTTCAATCGCTGCGCGCGGCGCCGTCCGCCTCGATCTCCTCCACCTCCTCGTCCCCGTGGTTCTGCTCGTCGACCTCGAGGAACGTGTTCAGCTGAAGCAGCACACGGGGGGGCTGACGGGTCCAGTTGCCCGTACGCGCGGGCGTGGTTGATGCCGATCGAGTTCCGTTCTCCGGTCGCCGGGTCGATTCCGACCGAGGTGAGCTCGTCGTCGAGGAGTTCGCAGGGGTCCAGACCTCCCAGGGTTGCGCTTGCCGAGGAGGAACCAGTTCCGCTGCTCGGTGTGGACGCCCCGCCCGTCGCGGAGGCGTCCGTTTCGGACGTCCCCGACTGGTCGCCGTTGGTGGTGGGGGTGGCGTGACCGGCCGACTCCCGGACGCAGCCGCTGATCGTGACGAGCGCCGCCAGCAGTGGACCTACCAGGA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-16.70,-16.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 83521-83339 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573984.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 83520 37 100.0 36 ..................................... GGTTTCCGCCGGGAAATCCCCCGGCGGACTCCGTGT 83447 37 100.0 35 ..................................... CTCGCCGGCGGGATCAGCAACATCGCTGAACCCTG 83375 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Left flank : CCGGTGTCCTTCGGTAGCGGTGTCCCCGCAGCCGTGCGCTCGGTGCAACGGCATCCGATCAGCCGCCTCCCTCGAGCGCGGATCGGAAGCGTCACGCGACACACCGGTGCTCTCCTAAGCGAATCCCGGGCGTGTTGTCCGATATGTCTGTCTCATGGTGGCGTGGTGTCGCCTCTAGACTGGAAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCCGGTGAGGATCGCAACGACATGGTGTCTCCGTGGGTCGTGCCCACCCGCGCG # Right flank : GCGTTCGCAACCGTTCATAAGCGCGAATATGCGGTTGCACCGGCCCTCCAGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCGCAACACCCGACCCCGATCACCACGACCGCGCGGACCTGACCGGTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAACGCCGGGCTGGGCGTGGATGCGTGCCCGGGCATCCGGTTGCACCGGCCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-16.70,-16.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22490-22002 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573987.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22489 30 100.0 36 .............................. TTGAACGGTGGTTGTCCACCTCGACGAACCCGGCGG 22423 30 100.0 37 .............................. AAGTCGAGCAGCTTGCCGGCGCGGACCGGGGGCTCGG 22356 30 100.0 35 .............................. GGGCGGGTCCGGACGTTGCGGCCGGTGCAGGCGGT 22291 30 100.0 36 .............................. TCGGACGCTGGCGCGGCGGACGGGACGGGCTCACGA 22225 30 100.0 35 .............................. AGGGGCCGAGCCGCCTCGACCCGGTCCAGCGCCAC 22160 30 100.0 35 .............................. GGCATGTTTGGCCTGGTCATGGACCTGATGGGGTG 22095 30 100.0 34 .............................. GCGCCCGGCGGCGGCCGACCGGGGAGGGATCGCA 22031 30 90.0 0 ................G..........TG. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GGTCCGGGTGAGCGGAGGTCACTCGCCTACGTGAACACCTTCTACTACTGGCTCGGCCCGTCCGTCGCCTGCTGAGTCCGGAGCGGTGCGCGTCGCCGGTGCGGCAGGACGGGCCCGGCGGCCCCACCGCAGGTCCGGGCGACCCGGCGGGCGCGTCGGTGTCGGCCTCGGCGCCGGGCAGACCGAGGACCGGCGCGGCGGCGTACGAGGGCGGTGGGCGGCATAGCCGGTGGGTCACGATGAGCGGAGGGGAGGGCGGCGGCGCTGGTCGTCCTCCCCCATCCGGCCGTCGTGCGGTCCCCGCGACGGAGCGCGCCGGCGGCGTGCGGTATACCGGAACGACGCCCCCCGGGAACGACGGAAGTGGGAGACAGGAGCCACCACGAGTGCGGCCGGATTTCAGCGAACCCCCCGGGGCTGATGTCAAACCTCGGGTTCGCTGCGGAACTGACGCGATCGACGCCATCCACGTGTATCCTGACCTGCGACTTTACTCTCGG # Right flank : GCCACCCTGTCCGCCTGCTCCGGGGTGCGGTCCGTGGTTCTCTGAGTTCCGGTGCGGGCCTCGCGAACCGGCGCCAGGTCGTCCAGGACCTGGGAAGCGTTGACACCCTGTGACCGCCCTGCTGCAATTCACCCGTGGTTCCCACGGTGCTGACTCGACGGCGGCACATCGACTTCGCCCGCGTCAACACCCAGGCGTGTCGTAGCTCCCTGTTCCTCGAGCTCTGACCGCCCATCCCGGGTCGCTCCGGCCCGCTTCCCGTGAGGAACCACCACCATGTCGTCGCGTTGGCAGTCCACGTCCGATTCCCCCAGCCCCGAGTTGCGGGCGGTGCCCTGTCAGGTCTCCTCGGCGCCGGTCCACCAGGGCCAGCCGAGTGCTCACGCCGAGATGACGGTGACCATCACCGTCCGCACGGACGTGGAGGAGGCTGCGTCGGTCACGGGCCGCCTGGTGCGGGCGGTACGCCGGGCCGTCGACCTCTCGGCGGCCTCGCTCAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 618-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAL01001768.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 contig94.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 617 29 100.0 32 ............................. TCGCGGTGGGCGTCCAACAGGTTCCATCGCTC 556 29 96.6 32 ............................G ACGACGTGGGCGCGCCACACCGCCCTCCAGCT 495 29 100.0 32 ............................. GAGACCGTGCTCGCCCAGCGCGCCATGAAAAT 434 29 96.6 32 ............................A TCGTTGACGGCATCGGGACCATCACCGTCGTA 373 29 96.6 32 ............................G CGCGTCTCGTCGCTCCGACGCTGACCGGCTAC 312 29 96.6 32 ............................T CTCAGATTCACGCTTGACGGTTTACGGTAGTT 251 29 100.0 32 ............................. AGCCCGGTGTGGGATTCGGTGTGGCAGGCCAA 190 29 100.0 32 ............................. GCTGCCTGCACGCTGCCGCCGCCCTGCACCCG 129 29 96.6 32 ............................G TGAGCAACGTGACCGTGACGCTCCAGGAGATC 68 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : TTCCGTAGTCAGGCAGCGGGTAAGGCGGCGCGGGCA # Right flank : CGTTGCACCTGTCTGGACCGCCCCGGTGGTGTTGGAGGCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21693-21466 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573948.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 21692 31 100.0 33 ............................... AGCGCGGCCCGGTACCGGGCGAGGGTCTCCTCG 21628 31 100.0 33 ............................... GGGGAGGTCCGTGTGTCCCTGCGACACCCACCG 21564 31 100.0 37 ............................... CCGCGCACCACGGGGTACCGCTGGACGCTGGCGAAGC 21496 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 100.0 35 GGTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CGCCACCACGGTGCGCGGTGGGGACACCACCCGGCGCGTCCAAACCCCGGATGTCCGGTCTGTTCTCGGGGGACGCGCGCCCACGAGCCAGGTGCCCGCGCCCCCGGCGGACGAGGTATCCGCGCACTCGCGACGTCCCCACCGCCCGGCCACCATCGAAGCCGCCGTCGCGCCGCGTGGGCGGGCCATTCGGAGGAGCAGGTTCTGCGCACCGGAGGTGGAGGAGCCGGCTCGGTTCGGCGTCTGGCAGGAGGCACGTGCCCGATAGCCTTGCTGGACGGCCGGAACACGGTTGGGCTCGGCGGGCGGAACGCTTCGCCCCCTGCTCACCGAACTGCGTCCCTGCCACGGAGACGCCGGGTAGTTGGAGACGGGAGCCATCACCACGTGCAGCCGAATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCGAATTGGGCGTCGTTGAAGCCGTCCAGGTGTATGCTGACCTGCGACTTTACTCTCG # Right flank : TGGCTGCTGTCCCTGCCGGAATCCTGGGGGGACGGGGTCCTCATCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGACGGGGTCCTCATCGCTCCTACGAGGAGTTCCAACGAGGGACGCTGCCCGCAGGACATCGGCCATCCAGGGTCCTCATCGCTCCTACGAGGAGTTCCAACTCGTTGCGCGCGCTTCCCACCCTTTCACTGCCGGTGTCCTCATCGCTCCTACGAGGAGTTCCAACAGGTGCAGGACCAGTCGGAGCGGAAGATTCTGCGGGTCCTCATCGCTCCTACGAGGAGTTCCAACCGGACGTGCAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 27886-28158 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL573948.1 Actinoalloteichus cyanogriseus strain NRRL ISP-5103 P169_Doro1_scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27886 29 100.0 33 ............................. GGGTACGACGTCGACACCCTCATGAGGGAATCG 27948 29 100.0 32 ............................. CGGGTTGTAAACCTTGGCGCCCCCTTCGTCTG 28009 29 100.0 32 ............................. AGGACGCCGTCCTCACGGATGCCCGCGCGGAC 28070 28 93.1 32 .....-......................G CCGCCGGCCAGCCGCCCGGCTTCGAGTGCGGC 28130 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CTCGTGATGTACCGGCTCACGGAACGCGGGCACACCCTGGTCGGAATCATCCTGGGAGCCGAGCCCCCAGCGCCGGCCGAGACCACGGCCTCCGCGAGAACGGGCGTGTCGCCGCACGTCGGCGGGTGACGGAGGCCGACCAGGTCAGTTGAGCCGCCCGACCACGAGCCGCGTGGTGACGAGCCGCGTGGCCGCTCGATCGCCGAGTGAGGCTCCCGCGCCCAGCCCGACCTCCTACCTGCTGGCGACTGAGGGCGACACCTACCGAGGCCGTGCCTCCTGGACGGGATGTTTCATGCCGGCGGAGGGGGACCGCCCGGGACGTGGTGGTGACCTGATCGGCTGCCAGGTCCTCCTTCGGGAGTTGACGCGGCGACCAGCGGTCGGTGCGCGCCGATGACCGGCATACTGAGTGCCGGAGGCGTGCGGTGCCGATCAACGCTTCGAGAGAAGTGAATGAAAAAGGGGCAAGTGCTCCGCGATACCGCAGGTCAGGAAGT # Right flank : GGACACCCAGAAGTCCATCGACCAGTTCGCCGGGGCCTCCCCGCCCGCAGGGCCCAGGCCCTCTACAGGGGACTCCCTCGCCAGCGCAAGTGGGGCGGAGAGGGGCACCAGTGGGCGTCCAGCGGGCCTCCCAAACAGTGCCTGACCTCGTGATTGTCCGCCGGGGTCGCACTGCGATGAGCTGGTCCCATGCCCCTACGACACTGTCTGCTCGCCCTGTCCGTCGCGGTGGTGTGGGGGCTGAACTTCGTCGCCATCAGCGCCTCGTTGGAGCACTTCCCGCCGATGTTCCTGGTGGCGTTGCGGTTCGCGGTGGTCGCCATCCCGACCGTCCTGTTCGTCCCCGCCCCTGGCGTCCCCCTGCGGTGGTTGCTCGGTTACGGCTGCGGGTTCGGCATCGTGCAGTTCCTCTTCCTCTTCTGGGGCATGGCCGTGGGCATGCCGACAGGTCTGGCGTCGCTGGTGCTCCAGTCCTCCGCGCCCTTCACCGTGCTGCTCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //