Array 1 2395853-2399878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065379.1 Faecalibacterium prausnitzii strain Fp40 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2395853 33 100.0 35 ................................. AGCTATCCCTGCGGCGATTGCGGCAAGGAGACCAC 2395921 33 100.0 35 ................................. TTCAAAAAATCGTTCCCGCTGGGTTCGGGCCGGTC 2395989 33 100.0 33 ................................. AATCAAAATCGGAGGATAGTATTCTTGTAAGGC 2396055 33 100.0 35 ................................. CAACATCGCCCGCCTGAAAAAAGGCAAGGCTCCCC 2396123 33 100.0 34 ................................. GTCATTGCTGGCGTCCCCTTTCAAGATCCAGACC 2396190 33 100.0 35 ................................. AGGAATCTGCCGCCGCCCTCGGTGTGCTGGCCAAC 2396258 33 100.0 35 ................................. CCGAAAGGAGTGATTCATCCCATGAGCAAAGAATC 2396326 33 100.0 35 ................................. ATCGACAACCTGGGCAGTATTTTTGACAGCAACGT 2396394 33 100.0 35 ................................. TCGACCAGAGAGCGACAGTAGGAGCAGGCGTCCCG 2396462 33 100.0 35 ................................. GGCAGGGGAGTGGCAAGCCCTACTGTTCCCATGCC 2396530 33 100.0 36 ................................. ATCCGCCAGCTGGGTGAGCTTGTCGCACACAGCTCG 2396599 33 97.0 35 .........T....................... CATCTGGCCGCTCAGCCCGCGCACTGCGTCGCGCA 2396667 33 100.0 36 ................................. TTGAGCTCTTCCCAGGTCTTGATCGCCGAGGTCCAG 2396736 33 100.0 36 ................................. TCGCAGTTTGTCCTCGACCTCGATACGAAACTGGGC 2396805 33 100.0 34 ................................. TCAGGCATGTTTTTTCCTCCAAATAAAAAAAGAA 2396872 33 100.0 35 ................................. TTCCTCCAGCGGAAGAATCGACTCGCCGCTGGACC 2396940 33 100.0 33 ................................. AGGAGGAACCCATGAGCACTCAAGCGGTCTGAG 2397006 33 100.0 35 ................................. AAAAAGCAGTCACCAAATGGGGCGACGCCAGCAAA 2397074 33 100.0 34 ................................. TTCAGCCGGTCGGCCTGCGGACGCCGGACGTCGA 2397141 33 100.0 34 ................................. ACGGCTGCGTCGCTGAGCGAAGCCATCACAAAAC 2397208 33 100.0 34 ................................. TTCAAAGCCGTGCTGTACAAGGACGGTAAGGCAT 2397275 33 100.0 35 ................................. ATAAAAGAATTATCCAAAAATGATGGGTATGATAT 2397343 33 100.0 35 ................................. GGCATGCGTTTGCGTCGGACTTATATGACGCAGGC 2397411 33 100.0 34 ................................. TTTTTCCATCCGCTCCGTGAGCTTTTGCGCAACT 2397478 33 100.0 34 ................................. CTGATCCAGAAGGGTATCCAGCCGGATGGTGTTT 2397545 33 100.0 36 ................................. CGCAGCAGCCTGTCAATCCTTACGGCGGCATGGGCA 2397614 33 100.0 37 ................................. TTCTGGATATAGCCCAGAATAGACGGACCGACGTAAA 2397684 33 100.0 35 ................................. GGTCTGCGTGACGGTGAAATCTTCCGAATCTGACT 2397752 33 100.0 34 ................................. TTCACAGCTCATTTCCAATACCTCGTTTCTAAAA 2397819 33 100.0 35 ................................. ATTCTGGTCATTTCCAAACGAATGCAACTTATCAA 2397887 33 100.0 33 ................................. GCTCGTGTTGGCCTGCTTGTCCAGATCCATGAC 2397953 33 100.0 34 ................................. ATCTCGCGCGTCCTCCTTAGTAAGCCCCAAATTC 2398020 33 100.0 34 ................................. ATTTTGGTCGTCGAAGCGGAGACAAAGGCCCTCG 2398087 33 100.0 35 ................................. TCCAAGTGGTGAATGGTGCAACAAGGATTTTTGGC 2398155 33 100.0 35 ................................. AGTTTTGCGTTATGCTATCCCACCGCCGTGTGCGA 2398223 33 100.0 34 ................................. ATTGTGTCTATATATTACCATACATACGCATGGT 2398290 33 100.0 36 ................................. TTCAGTGCCGCCGGGGAGAGCTTGGTATAGTCCGCG 2398359 33 100.0 34 ................................. ATTTGTGCGCATCGGCTGCTGTAACCGCTGGTAC 2398426 33 100.0 36 ................................. AACTTCAATTTCGCCGGGGTGCGGCCCAATCCCGCC 2398495 33 100.0 38 ................................. TTGTTCACAGACTTGTCGAGGGATGCCAGCGACTGCTG 2398566 33 100.0 34 ................................. ACCCAGTGGACCGCCCTCTGGTACGTTGGCGGCA 2398633 33 100.0 34 ................................. ACGACTATTCCACGACTATTTCAGAAGCTGTTAC 2398700 33 100.0 35 ................................. TTCCCAGTAGGCTTGCGCCCTGGGACAGGTGCAGC 2398768 33 100.0 34 ................................. ATATTCTCATCAAGGAACGGCCTCATGGATTCAA 2398835 33 100.0 34 ................................. ACCTCGGACAGGTCAGCAGACCAGCGAACGTCCC 2398902 33 100.0 33 ................................. TTCCAATCTCCACACAAGACGGCATAGACATGA 2398968 33 100.0 34 ................................. TCTTCCACATGTGCAGGCAGTACGGATGGGTGTT 2399035 33 100.0 35 ................................. GCTTAATGGCTTTTGGGAAAGACAGTTCCAGAAAG 2399103 33 100.0 34 ................................. TCTTGCCCGGCGGCGGTTTTGAGCGCTAGGGCCT 2399170 33 100.0 35 ................................. TCACTTCAGAGGTCTGGCCTTCCTCATCGGTCACG 2399238 33 100.0 35 ................................. AGCTATGAGGTGGACACCAAGACCGGCCCGCTGAC 2399306 33 100.0 33 ................................. CCGTTCATCCAGACAACCGTGTTGGTTTCCTCC 2399372 33 100.0 35 ................................. CTCTGTGGTGCTGTCGATGTCGACGATGCACTCGC 2399440 33 100.0 34 ................................. GCCTCGTTGACCATGGCTTGCAGCATATTGCGCC 2399507 33 100.0 35 ................................. TTGCAAGTCGGTAGGCCATCGTCGAAAATTGCCCC 2399575 33 100.0 34 ................................. CTATGTGAAGAAAACCAACCCGCGCACTGACCTT 2399642 33 93.9 34 .....T..............T............ GTCGTCGCCTCCATTCGCAGCAAAACCAGAACCG 2399709 33 100.0 36 ................................. CACACTGGCCGTGGTGCCTACGACAATGCCGTGGCA 2399778 33 97.0 35 ............A.................... ACGGACATCGACTGGCTGGGCGTTGGTAAGAACGT 2399846 33 97.0 0 ..................A.............. | ========== ====== ====== ====== ================================= ====================================== ================== 60 33 99.7 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CCATTCTTCTGGAAGTGAGGTTCGTCTATGCTGGTCCTGATCACCTACGATGTCAACACTGAGACCGCTGCTGGGCGCAAACGCCTGCGCAAAGTGGCCAAAAAGTGCGTGGACCACGGGCAGCGGGTGCAGAATTCTGTCTTCGAGTGCCTGCTGGACGCCGCACAGTTTGCTGTTCTGAAGTCCGAGCTTGCCGCTCTCATCGACCCCGATCTGGACAGTCTGCGGTTTTATCAACTGGGCAACAACTATAAGACCAAGGTCGAGCACATCGGAGTTCATCCCCTGTTTGAATCCGGAGACGTGCTGATCTTCTAGCCCTCTCCCTCGGTGCGAATGGAAAGTGCTCACCCTTTTTCCGTCTCCTTCGCACCATGTTTTCAAGGCATTCTGTGCAGATCGCGGCTCTTTTTTCGGATGTTTTTGGAAAAGCTCTTCCAAATCTGTGCAGATCGTTTTATAATGAAACAAAAGCGGAGATGTTTTTCTCCGTTTTTGCT # Right flank : TGTGTCGGTGGTCTACCTGTCCGATGATCACCTGCGGTCGCCCTCCTCGCGGACGGCGGAAGATGCCGCCCGCCGGGGTGAGCACATTGGCCATCTCATTTTCCTGCACGACAGTGGACAGATACCCGCTGTGGCAGTGATAACGCAGCAGGCCGACCCGGCCGAGCTATGCTGCAAAGTGCATCTTTTAAGATGACAATTTCCTTGTCATCTCGCTTCGCTCGAATCTTATAGCTAAAGCATTTTCTACTCCACCAGCGGAGCTGTTGGTTGTCGCCCGCTCAAGCTACTCAAAACAAAAGCAAAAGGCGGCATGACCCGTTGTATGGGCCACGCCGCCTTTTGCTTCAGGGCTCGTTTGCCTGCAGCACACAGGCACAATACCCCGGTTCGGGCTGATAGCAGTGGATGGTCAGGTATTTGTCCACCTCCGGGCTGTAATCGTGGAGGGTATGCTTCGTACCGTTCAGCGCCACATCTGCATAGGACACCAGCCACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2708370-2708035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065379.1 Faecalibacterium prausnitzii strain Fp40 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2708369 29 100.0 32 ............................. GTCGAGGGGCCAGACCTGGGCGCGGAGATTGA 2708308 29 96.6 32 ..............T.............. CACTTCTGGTGGCAGGGCAAGCTGTACAGCCG 2708247 29 96.6 32 ............................T CATCACGCACATACTTCAGTTCGGAAGTGTCC 2708186 29 100.0 33 ............................. AAGTACAACAACGGCAAGCTGCGCTGGCTCATG 2708124 29 96.6 32 .........................C... AACAACGCCGCAGACAACAGCGTGAGCAACGG 2708063 29 75.9 0 T....................C.T.CGAA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.3 32 CTTTTCCCCGCATACGCGGGGGTGATCCC # Left flank : TGGAGCCGGGCAGTTGCTGGCAGTTCCGGCTGACTGCAAACCCCACCAAAAGCTGCAAAGACACCAAAAACCCCGCAGCGCGGGGAACTGTGGCCGCACATTGCACGACACAGTACCAGAAGCAGTGGCTGTTGGAGCGCGCTGCAAAGCACGGCTTTGCTCTGCGGGACGAGGGATTTACCGTGACCAGGGTGCAGTGGCAGCACTTTGCCAAGCACGGCACCCGGCCGGTGACCCTGCTGGCAGTGACCTATGAGGGCATTTTACAGGTGACCGATGCGGAACAGTTCCGGGCACTGCTGTGTCAGGGCATGGGGCGCGGCAAGGCCTATGGCCTTGGGCTGATGACCATTATGCGCGGAGGAAACTGAGATGGACGAGATGCCGGGCATGATTCGGCCGGGCCTACAGGCGCTGCCACAGGTGAAAGACCGGATGACGTTTCTGTATCTGGAACACTGCACCCTTGGCCGACAGGACGGCGCGATCACCGTTACAGA # Right flank : AAAACAGCCACAGGCTAAACTAAAAATGAAATGATGTTTCTGGAAAGGAGAACTCTGTAATTTTGGCACTTGCTCAGGCTGCTATTAAAAACCCAAGAGCATAAGGACTTTATGACGAATTATCGTTAAAAATCAAGCAAACAAATAAGGCTCACCGCCAATTTTAGCGGTTGGCCTTATTTGTTTGCTCATGTATGAGGTGAATTGCGTTTAACACGGGGGCGCTTCCCAGAAGCATCACAGATACACCTCCACAGTCAGGTCGGTCCACGCTGCACGGCGGAACTGGTGGGGCATCTTGTTGGCTTCCCGGTAACGCTTGGCGGTTTCAAAGTCGATGGTGAAGGTGAGGATGGGCTTTTCCGATACAGCCATCAGATCGGTGCGCTCCTCTTTGGACTTCTTGCAGCCGGTGTTCAGCTTCCAGCGGTAGGAGTAATCGGCAATAGGGGTGACGACTTCAACGAACTGCTCAATCAATTCGGGCGCAAGACAGGCAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //