Array 1 218594-217892 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGE01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2167 NODE_1_length_479827_cov_6.57493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218593 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 218531 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 218470 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218409 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218348 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218287 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218226 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 218165 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 218104 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 218043 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 217982 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 217921 29 96.6 0 ............T................ | A [217894] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236223-234853 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGE01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2167 NODE_1_length_479827_cov_6.57493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236222 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 236161 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 236100 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 236039 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 235978 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 235917 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 235856 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 235795 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 235734 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 235673 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 235612 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 235551 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235490 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235429 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 235368 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235307 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235246 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 235185 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 235124 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 235063 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 235002 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 234941 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234880 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //