Array 1 5324-5097 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000014.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5323 29 100.0 37 ............................. TCGAAGACCCTATCGCAAGAAATCAAGTTGGAGTCGC 5257 29 100.0 37 ............................. TGAAAATCTTTGTCTGAGTGTTAAATTCTCCATCTAC 5191 29 100.0 37 ............................. TTGTAATACCTATCACCTTGTAACTGCTCTTTTCTTG 5125 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATACTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAGATGCTTCTCTGTCCATCTCTTCTAAAACATGAGAGTATCTATTCGTAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGCAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAACAGTTGAAATATAAGGCATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGCGCTCACTGCAATTTTAAGAGCATTGTATATGTGTAAAAATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTAAAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATATGGGTTATTAGGCTGGACTAATGAAGAAATATTAAAAGATGTTATGGGTATAGAACCTAATTTTTTAAAATTATATCTGAAAGTGATTAGAAATTTTGAAGATGCTCTTATAAATGAAGATGCTGAAAAGTAAAAAAGAATTATGAAATTTTAGATAAAATGTTACATCCTAAAAATCATCTTAGAAAAATGTTGCAAATACAAATGGCAGGTTTTATGGAATGATAAAAATAGAAAGAAAACCTAAATCCAAACAATTAGCAGAAGAGTATAAAAAAACGTATGGAATAAAAAATATATATAAAATACACTTTTTGCCATGTCTAATGGAAAATGTTGCTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 76700-77652 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000010.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 76700 29 100.0 39 ............................. CGATTCCTCCATGTTTTTATGTTTTGTTATATATTTCAA 76768 29 100.0 34 ............................. TCATTATTACACTTCCTAAGTTTAAAATAGACGC 76831 29 100.0 36 ............................. TCATGAGAATGCTTAGTTATAACTATAGAAGTGTAT 76896 29 100.0 38 ............................. ATGCCTACATATTGTTTAAACGAAAAAAATTATTGTGC 76963 29 100.0 36 ............................. CTTTACTTGGTATTGCATTAATAGCGTCTGTAACTT 77028 29 100.0 38 ............................. TTGGAAAAAACATAATAGCTGGGATAATAAATGGGCTT 77095 29 100.0 37 ............................. TTGTTTTAACTCCGTTATCATTTTCAACCACCAATTC 77161 29 100.0 37 ............................. TCAAAATTATTTAGTAATATTAAACAAAATATTAGTA 77227 29 100.0 38 ............................. ACTGCTATCATGAAAAAGTTTTTATTTTTCTTAGAACC 77294 29 100.0 37 ............................. GAAGTACCGATTTTGACAGCAGAGGGGTTATTCGCTT 77360 29 100.0 38 ............................. ATGGAGGGTGGTTATTATCAAGCTATGGATGGTAAAAG 77427 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 77493 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 77559 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 77624 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 15 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 126518-125246 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000004.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 126517 29 100.0 36 ............................. TCCCTTTTTCACTATAGTAAAATACTTCTGTTCCAA 126452 29 100.0 36 ............................. CAAGATTGGGTTGATTTTTTGCGATTAAATCATCTT 126387 29 100.0 37 ............................. AAAGCGGAGAAAAATCTATATCAACAGCAGGAATATC 126321 29 100.0 37 ............................. AAGCTCTTAAAACTTGCAAATATTATAGAACCTTCTT 126255 29 100.0 37 ............................. ACTGGAATATTAAACGATAACAGAATAAAGCAGACAA 126189 29 100.0 37 ............................. TTATATAAGCACTCCCTCAATAGCTTCCTTAAGTATC 126123 29 100.0 36 ............................. TTTACCCCATTCTAATGTTTTAGTTTCTTCTTTCTT 126058 29 100.0 37 ............................. CAATACGAGGGACATTAAAAAATCGTATTAAAAAAGA 125992 29 100.0 36 ............................. CTAAGTTCTCATATTCATTACCAATTACTTTGTAAT 125927 29 100.0 36 ............................. ACTTGCAAATAAACTTTTTTAGATTGTTCAACATCC 125862 29 100.0 37 ............................. TAGAATCAGGTCAAATACTTGATTACATGACAGTAAA 125796 29 100.0 37 ............................. TTTCTTTCATATAATATGATGTCAGACACATGTTAGC 125730 29 100.0 37 ............................. GGTTTTTTAGAAATTATAACAACACATATTTGGGATA 125664 29 100.0 36 ............................. TTTATCACATAAACATTTAATTCTGACCTTGTTTCA 125599 29 96.6 36 ............................G TACAACGCAATCTGCGAGGGCGAAAATTCTCTAATT 125534 29 96.6 36 ............................G TTTCTTATCGTATACTAAGAGGCGAAAAAGAAATTG 125469 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 125403 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 125338 29 82.8 34 ............TA...CA....A..... TGTAGAATCAACAATAGCATATACTAAATCAGCA G [125311] 125274 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 96.9 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAAAATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 296566-295198 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000001.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 296565 29 100.0 37 ............................. CCAGTAATTTTTTATTTTATTTTCATTTCTTTATTTT 296499 29 100.0 37 ............................. GAGAAAAATTTTTAGCTCGCTGGTACATGCAAAACTT 296433 29 100.0 39 ............................. GTTGAAATTACCAGTTTTGTCGCGTCTTCTCTTGCTCCA 296365 29 100.0 37 ............................. CAAAGTGCAAGGTCTTTAAATGATGCAACTGTAGATT 296299 29 100.0 37 ............................. ACGGAAATGTCTTTTTATAAAAAATCAACAGAAAGTG 296233 29 100.0 38 ............................. CTAAGTGAGAATAGTTTAATAAGAATTGCAAGAGGAAT 296166 29 100.0 36 ............................. TACAAATGTAATAAATGACCATGTCAGAGAGGAAGA 296101 29 100.0 37 ............................. ATATTATTTACAATTTCAAGACCAAGTTCATCCAGGA 296035 29 100.0 36 ............................. ATAAGAGTGGTTTAAGAAAATAAGTTATTTTTCAAA 295970 29 100.0 36 ............................. TTGATATAGCTGAAAAAATGCAAGCTTATAGCAGAG 295905 29 100.0 37 ............................. GTTATAGATACAACTAGAATAGATTTAGAAGATAGTG 295839 29 100.0 37 ............................. TTTTGAACAACTGTTCCAGCTTTTCCTTCAAATATTA 295773 29 100.0 36 ............................. ATGATTATCGTTCCTTTTCTTCTTCCAAAATCATAA 295708 29 100.0 37 ............................. TAGCTTTCCTCCTAATTTTGATTATTTATTTTTTATA 295642 29 100.0 35 ............................. TAGTTTAAAGATTGCATTCTTATACCCGCTAGTTC 295578 29 100.0 36 ............................. GTACTCAATATTATTATTCAAATAACTTCACCTCTA 295513 29 100.0 0 ............................. - Deletion [295485] 295484 23 69.0 38 ------..........G...T.......G ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 295423 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 295356 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 295291 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 295226 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 95.5 35 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGG # Right flank : TAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGCTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 285882-285322 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000002.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 285881 29 100.0 37 ............................. ATATTTAATAAACTAAGTAAAGGCGATATGGATACTG 285815 29 100.0 38 ............................. GGTCGAGATGCTATTATTGCTGAAACAGTTTCTATTAA 285748 29 100.0 38 ............................. GCAAGAGCAGAAATAATAAAATTTATAACATTTGTAAC 285681 29 100.0 37 ............................. TCCTTTTATCTGTAAATATCATTACTTGCCCACTTCC 285615 29 100.0 37 ............................. GCATTAAAATGTATGCTAACAAACCAATCTAAATCTT 285549 29 100.0 39 ............................. AAGCATGAATCTATTGCTAAATCTATCTTTTTAGGGTCA 285481 29 100.0 37 ............................. TTACAAGCCACAAACATAATAGCGCAAGTATAAAGAA 285415 29 100.0 36 ............................. AATGAACTATCTAAACCAAGGTCATAATTTAATTGA 285350 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCTTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTATATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 61133-61957 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000003.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 61133 29 100.0 37 ............................. TTTGAAAACTCTTTAATTAGCACACTCTTTTCATCGC 61199 29 100.0 38 ............................. AAAAAGATACAAATTTGTTTAAAAATGGAAATAGAAGG 61266 29 100.0 37 ............................. CCACCATCCCCAACTTTTATTTTTGCAAAATCCACTC 61332 29 100.0 37 ............................. ATTTATGGATATGTAACATAAAGCTTACTTCTTCTGA 61398 29 100.0 38 ............................. TTGTTTAAGTCTTTGAAAGAGGACACTGAAATAGTTAA 61465 29 100.0 38 ............................. ATAAAAAGTCTCACGATAGTCTCCAAAAAGTCTCAAAA 61532 29 100.0 38 ............................. TGCACTTTTACACCTTTTTGGTAAGCATACTCAACCAT 61599 29 100.0 37 ............................. ATTGGTCTTGCAATTGGTGGTGCCTATTTGGTTTGGA 61665 29 100.0 38 ............................. AAAATCATGATTATGTTCTAAATAGTAATCAAGAGATT 61732 29 100.0 37 ............................. CTAAAATATCTTTCAACCTTTAACATTTCAGCCCCCT 61798 29 96.6 36 ...............A............. CCTCTCAAAGAAGTAACAGGTGAAGAACCTTCTTAA 61863 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 61929 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 96.8 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATATGCATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 169735-170029 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000003.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 169735 29 100.0 36 ............................. GATTAAAAGTACTCTCTTTTTTAAGTTGAGCTTTTA 169800 29 100.0 36 ............................. CAGCTAGAACTTTCAGCAACTGTGCGAGGTGTGTCT 169865 29 100.0 39 ............................. TTAGAAACCTTTCCGTCTAATAATAGTGCTAGATATTTG 169933 29 100.0 39 ............................. AATAATTTTGATGCAGATGGTGAGGATTATTTAGTATCA 170001 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 100.0 38 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : GTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 31261-31949 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000035.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31261 29 100.0 36 ............................. CTACTCTTAGGAACACGACCAACAGAAGCAAGTTGA 31326 29 100.0 37 ............................. TGAACTTTTTGCCAGGATTAAGCTCTCTAGGTTTATG 31392 29 100.0 38 ............................. CCAGATGGAGCAATTATAAAACCAGATGGAACTATTAT 31459 29 100.0 38 ............................. TTGCGTTGCAATGTAGAATCATTAGTTTAATAATACAC 31526 29 100.0 37 ............................. TGCTACTGTTCTCCTTTTATCTTATTACTTCCCATAA 31592 29 100.0 36 ............................. AAAAAGGAGAATTTGGAAAAACAGATAATACAAAAT 31657 29 100.0 38 ............................. AACTTTTACTCATGGGGCTAGCCCCAAACCCAACACTC 31724 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 31790 29 100.0 36 ............................. ATCTATATGCATGGGCAACAGAAACATTGCCAGGGA 31855 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 31921 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.7 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTTCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2271-3619 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000038.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2271 29 100.0 37 ............................. TAAAAGCTGGCGGTAATGTTATTTTGCAAGATGCATT 2337 29 100.0 39 ............................. TCTTTTACGTTGGCTTAACTGATTATTTAAATTAGTAAT 2405 29 100.0 37 ............................. TTTTTTACGATAAATAAAAAATTCAGAATGGTCTTTA 2471 29 100.0 37 ............................. GTGTAAGGATGATATGAACCTCCGCCACCACCTGCGA 2537 29 100.0 36 ............................. TTTTCTCTTTCAACTTCATAGTAAACTGGTTTCTGT 2602 29 100.0 37 ............................. TTATATAAATAAAATAAGTGAGATGGTTTTAGAATAT 2668 29 100.0 38 ............................. TTTTTGAATTTGAATAAAGTTGATTCTGATGTTTTAAG 2735 29 100.0 37 ............................. ATTATTGGCGATTTCTAGTTACCCAACAACATATAAA 2801 29 100.0 37 ............................. ATTAAATCATTAGAATCAGAAGGAACATAAACATCTA 2867 29 100.0 35 ............................. TAGATTTTTCCTTAAAATAAAATAACTTGCCACAC 2931 29 100.0 37 ............................. AACAAATACTTTTTGCTTTAATCTCATTTATAGGCTT 2997 29 100.0 38 ............................. TATTTTATGTTTCTGATGTTTTATTTAAAAAATTTCAA 3064 29 100.0 37 ............................. AAAAATACGTTGACAATATTCGTATAAGAATATATAA 3130 29 100.0 37 ............................. TCTTGTATGGGAGATTGGTACTTAAAATTAGATAATA 3196 29 100.0 37 ............................. ATAACTGCATTTGGTTTTATTTTTGCAATCTGTTGTT 3262 29 100.0 38 ............................. ATCTAATATACTTACATTAAAATTAATTGTATCTGCCT 3329 29 100.0 37 ............................. GTAGCCTATTGTTTGGTTTCCTGACATTTCGTAAGAC 3395 29 100.0 37 ............................. TAGTTTCTTCTATGCTAGAATGTCCAAGCATTTCTTT 3461 29 100.0 36 ............................. TACTTCTAAACTAGAAAAACTCCCATGATTGAAAGA 3526 29 86.2 36 A.....T........T....T........ TACACATTTTCTCAAATTTGGACTTCAATTAAAAAT 3591 29 82.8 0 ......T........T.....C.TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 98.5 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : TATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCAAACACGACTAAGAGTGACTTTGATTTTAAACTTACAATCAAGTTTAAAAGAAATAAACATTAATTTTTAGAACTTCACTCTAGTTTCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTCTTGAACAAAATAGGGCTTAATCATTGAAATGTAAGGTATTGAGAGTATATGATAAGCATTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAACACTTACTTAAAAAGTAGGTGTTTTTTTATTGAAAGGATGTGATAATAATGTAAAAATTTTACTTATATAGTATAATAATCTTATAAAATTATTATACTAGGGGGAATTATTATGTTTTGCTCAAATTGTGGTTATGAAATAATAGGAGCAGGAAAATACTGTTCAAATTGTGGAACAATCGTATTATCAAGTGTAATAGATAATGATGATTTAATTATAGATGTAAATGGAAAAGAATTAAATATGACCAATATCTATAAAAAAACTAAAGGGGATAAAGTTTTAGCACTTGATACTGTAATGGAATTATCAAAATTAAGTATAAAAGATTGCAAAAACCTTATATATCCAATTTTTGAAGAATTGAGTGAGAAAATAGATATCGAGGAAAAAAAAGACACATTAAGAGAAGACGAGTATAAGCAAATTAATACTATTGAAGATGATAATGTTGCACATTGTCCTAGATGTGGTTCTGTTTCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 6112-6603 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMLM01000038.1 Clostridioides difficile isolate CD105HS13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6112 29 100.0 38 ............................. AATATTCTAGCAAAATCCCAAGGCAAACTAAATGGAAA 6179 29 100.0 37 ............................. GTTGAAAGGGGGTGGAGAAAATGGGGATGAAAGTAAG 6245 29 100.0 38 ............................. ATTTTAAATAAAAAAGGAAAATACACAGGACAATACAA 6312 29 100.0 38 ............................. GGAGTAAATATAGATACATTTGGTCATGGTTATACAAA 6379 29 100.0 36 ............................. TTGCTTACAGAAAGAGCAGCAATGTAAACAGCTACT 6444 29 100.0 36 ............................. AAATTTAATCTATATCGTTGTAGCAAAGGCATAAAA 6509 29 100.0 38 ............................. CAGTCACATTTTTTAATTCTTATTGGATTTTTCTTCAT 6576 28 86.2 0 ....................-..TC...A | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 98.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TATAAAATTGAGTAAATTTATAAGATTGTATTAAATAATTTATTTTAGTTTAGTTTAGTTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATAAGGATATAGAGTATTTTGCAAAATTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGTAAAGATATTAAGAGAAATACTTAGAGAGCAAGAAGAGAGAAAAAATAAGTAAAATAATATGAATAAAGCACTTGGATATTATGATGTTTCAAGTGCTTTATATGGTAAAAAATGGTATAATAAAAATATAGGAATTTTGCAGTGTTCGATTTTTCTACTCAAGTATAGTTTAACAATTGGAATACAAGGTATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTATTGGTCGCTCACTGCAAATTTGAGAAAGTTATATGTGTGTAAGCATTGAAAATGGCCAATTTAGTTTGAGG # Right flank : ACTAAATAAACAAAGAAAGCACTTACAAATAAGTAGGTGCTTTTGTTTTGCTCAAATTTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGAATAAGTTATTGACTTTTGAGTTCCAAAACTATATAATTTAATTATGGAACTCAAAAGTGAGGTGATAACATGAGTCCTAAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAAACTAATGATATTAAGGTTAGAGTAGATGATGAAACTAATGAAAAATTAGATGAATACTGTAAAAAAAATAACCTTACAAAAGCAGAGGCTATAAGACAGGGAATCCATTTACTTTTAGAAAAATAACAAAAATAGAGCATTCTCCCCGACCAAAGTTTGAATGCTCTATTTCCAACAAAGAAGTAATCTTCTATATGAAATATTTTATCATATAGAGAAACTTCTTTCAAATTAAATTTAGGAGGAGTATGTATGATGAATAACTTACAAATATTTAAAAATGAAGATTTTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //