Array 1 123419-127526 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXEB01000005.1 Vibrio cholerae strain CHNf1 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123419 28 100.0 32 ............................ TCTCACGCGCGGGGCAAGATGGCAACCTTAAC 123479 28 100.0 32 ............................ TTCATGGTGTACGGAAGTGCATAAGTCTTGTC 123539 28 100.0 32 ............................ ACTGTTTAAAAGGCGTAACATCATTTTACTTC 123599 28 100.0 32 ............................ TTGTGGGTAGTAGTCATATAAGTCACTCGCCT 123659 28 100.0 32 ............................ ATCAACCAAGAGGAGTGCTCTTCGTATTACGC 123719 28 100.0 32 ............................ GTTAAACCGGACGCTACCGTAGGCAGCTAGGC 123779 28 100.0 32 ............................ CATAACTACCGTTCCAGCTCGTGTAAGCCCAT 123839 28 100.0 32 ............................ TGTGGTTGCGGACGACGCGACAAGCGAAGTCG 123899 28 100.0 32 ............................ GTTCATGGTGTACGGAAGTGCATAAGTCTTGT 123959 28 100.0 32 ............................ TATACTGGCGCACCATGCGCTCAACACGTCTA 124019 28 100.0 32 ............................ ATGAGGTGTGCTTCACGCTCTCGACCGTCCAC 124079 28 100.0 32 ............................ TTTTTCAGTGGCCTTTTCAATTTCTTTTTTGT 124139 28 100.0 32 ............................ TTTTTCAGTGGCCTTTTCAATTTCTTTTTTGT 124199 28 100.0 32 ............................ ACTGGCTGCGCTGGATTCGGGATAGTGTTTAC 124259 28 100.0 32 ............................ TTCAAGAGCTTGCGACCAGTCGAGATGGCCGA 124319 28 100.0 32 ............................ TTTTCTTGGCACATGATAGTGATTAGTCGTCG 124379 28 100.0 32 ............................ TTCAAGAGCTTGCGACCAGTCGAGATGGCCGA 124439 28 100.0 32 ............................ TTTTCTTGGCACATGATAGTGATTAGTCGTCG 124499 28 100.0 32 ............................ TTCAAGAGCTTGCGACCAGTCGAGATGGCCGA 124559 28 100.0 32 ............................ TTTTCTTGGCACATGATAGTGATTAGTCGTCG 124619 28 100.0 32 ............................ TTCAAACTCCTCCATCAATGCCGTTTTTACCG 124679 28 100.0 32 ............................ CCAATCTCTGCGAGCCATTATTTTGAGTCCTC 124739 28 100.0 32 ............................ TGAAAAACCGTCTTGATGTACGCCTGCGTAAA 124799 28 100.0 32 ............................ TCAAGCGCTTTCAGAAAGTTTGATACATCGTA 124859 28 100.0 32 ............................ TGCATGGGTACAAACAAAGCGCCGCATTCCCC 124919 28 100.0 32 ............................ TTATCCAAAATCTCTAAGAGCAGTTCGACAGG 124979 28 100.0 32 ............................ TGATACGCCAAACAAGCAATGGGTAAACAAAC 125039 28 100.0 32 ............................ AAGATATGTCGAGTGATGAAATCGCCGAAAAG 125099 28 100.0 32 ............................ TAAAGAATGGCTAGCTACTTGGAAAAAGGTTT 125159 28 100.0 32 ............................ TTCTTTACTTGCGGCATTAGCTACCCGTGTTG 125219 28 100.0 32 ............................ TGACGCTACCGGAATTTTTTGATTGATTGACG 125279 28 96.4 32 ...T........................ AGTAATGAGCATTAACGGCGGCTCAGATAATG 125339 28 100.0 32 ............................ TAGAAACAGGCGGCCTCAATGGTCGCCGCAGC 125399 28 100.0 32 ............................ TTTTTGCTTTCTGGCGCGTTAGAGAGCGTTAC 125459 28 100.0 32 ............................ TGAAACTCTTGCAATGTTAGATATTGCGGCAT 125519 28 100.0 32 ............................ CATATCAAGCAAGCGCTCGATGGTTTTAATTG 125579 28 100.0 32 ............................ AATACTCCATCATCGCTCAGCGCTTTGGTGAT 125639 28 100.0 32 ............................ TCTTGCTTTAGAAACTCGCCGTTCTCTTTGCG 125699 28 100.0 32 ............................ TCAAGCCCACAACTACATTCCAGATCTTGAGC 125759 28 100.0 32 ............................ TCTTGCTTTAGAAACTCGCCGTTCTCTTTGCG 125819 28 100.0 32 ............................ TCCCCATACTTAATGCGCTCTAAATGGCCGAT 125879 28 100.0 32 ............................ ACTGCAGCGCCGTGTCGCTTAATGTCCATGCC 125939 28 100.0 32 ............................ TCCCCATACTTAATGCGCTCTAAATGGCCGAT 125999 28 100.0 32 ............................ ACTGCAGCGCCGTGTCGATTAATGTCCATGCC 126059 28 100.0 32 ............................ TCAAGCATCGCCGCCGTGACTTTACCCAAGTC 126119 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 126179 28 100.0 32 ............................ TCAAGCATCGCCGCCGTGACTTTACCCAAGTC 126239 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 126299 28 100.0 32 ............................ TCAAGCATCGCCGCCGTGACTTTACCCAAGTC 126359 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 126419 28 100.0 32 ............................ TTGCTACCATCGAGCTAACACTGAGAGCCGCT 126479 28 100.0 32 ............................ TCATGATGGGATTGGCCGCTGGTGTACGCTTT 126539 28 100.0 32 ............................ TGAAAAGAAAGTGCTGATCGGTTCGCCAAACG 126599 28 100.0 32 ............................ GTACCACGTAAAATTGCCCGCGATAATATCCG 126659 28 100.0 32 ............................ AGATAGCCCAGAAGTCAAAGCCATGACCAAGC 126719 28 100.0 32 ............................ ACCAGGAGCATTAATACTACCGATAGTTGTTC 126779 28 96.4 32 ...........T................ TTTGGGCTAAATTCGCGTCCAGTAGGTGTTAT 126839 28 96.4 32 ...........T................ ACTTGTCTCTGCCGCCTCTAGCAAATACCTAT 126899 28 96.4 32 ...........T................ GCCAACTGTACCCACTGCGGCAATTGCACCAC 126959 28 96.4 32 ...........T................ TCGGAACTGGTGCGCATTGCGAGTAAATGTGC 127019 28 96.4 32 ...........T................ TTCACTATCTGGATCTCCTGCATGGACTAGGC 127079 28 96.4 32 ...........T................ GGCCTAATCGCTTGCAGTGAACAACGTGCTCA 127139 28 96.4 32 ...........T................ TGTTCAATCCAGAGCAAGCAGCGATAAGGTTA 127199 28 96.4 32 ...........T................ ACAAAGAAAAAACCCGGAGCGAATCCAGAAGG 127259 28 96.4 32 ...........T................ GCGATGCCGGACAGTAGCGCGAACTCTTGAAG 127319 28 96.4 32 ...........T................ TAATGCGCCGTGAGTGGTCAAATCAGACAAAA 127379 28 96.4 32 ...........T................ ATTTGGGGAAAGGTGGTTTCTGTTTGGGAAGT 127439 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 127499 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 69 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //