Array 1 28496-29251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890313.1 Klebsiella oxytoca isolate MSB1_10D-sc-2280340 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28496 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 28557 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 28618 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 28679 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 28740 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 28800 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 28860 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 28921 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 28982 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29043 29 100.0 32 ............................. TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29104 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29164 28 96.6 32 .....-....................... CACTACCAGATCCGAATGGACACCCGTAATGA 29224 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3703857-3703349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890312.1 Klebsiella oxytoca isolate MSB1_10D-sc-2280340 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3703856 28 100.0 32 ............................ TCGCCCCGCAGCGCCAGCCGTGCGGCCAGTAC 3703796 28 100.0 32 ............................ GGAAGAGGAAGCCGGTTCCGTGCTGTCTACTG 3703736 28 100.0 32 ............................ CGATTAACACCAAAATTTAATTGGTAATTAAA 3703676 28 100.0 32 ............................ ATACTTTCCGGCGGCATGCTGCCCGGGCGCCA 3703616 28 100.0 32 ............................ AGAATTCTGGTTATGAAGTAATCGGTGATTAC 3703556 28 100.0 32 ............................ TCAAGCGGCGGGACCGGGCTGTAGCTGTAGCG 3703496 28 100.0 32 ............................ TGGATATTCGCATCGCCAGAAAGATAATAAGC 3703436 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 3703376 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTAAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCCAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGATTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3714175-3712285 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890312.1 Klebsiella oxytoca isolate MSB1_10D-sc-2280340 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3714174 28 100.0 32 ............................ ACGTAATGAGCGCTCTGGCGGAAATGGAAAGA 3714114 28 100.0 32 ............................ TACAAAAATTCCTTATAATCCGTCTACTAATG 3714054 28 100.0 32 ............................ GAATTAACAAGAAGTTTATGGACGCGAGCCTA 3713994 28 100.0 32 ............................ TTTAATGTTAAAGCGCTTGCTGTTGCATAGCT 3713934 28 100.0 32 ............................ ATTTCACAATTAGGCGGTAATTCAATTTCTAG 3713874 28 100.0 32 ............................ ATTCGGTGACCGCGTTTCGGAATCGTTGTCAG 3713814 28 100.0 32 ............................ CCGACCGCGCCCAGCATGCCGCCGCCCTGATA 3713754 28 100.0 32 ............................ TCATAAAAAAGGCCCGCATTTGCGAGCCTGTT 3713694 28 100.0 32 ............................ GGAAAATATGACGGTATAGGTTTTGTATTAAC 3713634 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 3713574 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 3713514 28 100.0 32 ............................ GTAATGCGCCGGCGGTCGCGCTTGCGCATAAA 3713454 28 100.0 32 ............................ GATGCTATAGCCGCAATGAATACCGGAAAATA 3713394 28 100.0 32 ............................ TTTAATAATGATGTGTAGGCCATTACCAGAAG 3713334 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 3713274 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 3713214 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 3713153 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 3713093 28 100.0 32 ............................ AATTACGACAGGGACGATACGAATTACTTCAC 3713033 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 3712973 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 3712913 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 3712853 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 3712793 28 100.0 32 ............................ GGCAACTGGCAGAATACGCTGACCGGGCAGCA 3712733 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 3712673 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 3712612 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 3712552 28 100.0 32 ............................ ATGCACCGGAAGAAGAACGCTGATCAATTGCC 3712492 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 3712432 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 3712372 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 3712312 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3727642-3727434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR890312.1 Klebsiella oxytoca isolate MSB1_10D-sc-2280340 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3727641 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 3727581 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 3727521 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 3727461 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //