Array 1 903509-903720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGBP010000001.1 Escherichia coli strain P24-5 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 903509 29 100.0 32 ............................. AGTTTAGCAGCCATCCTAAATACCGGTCTATC 903570 29 100.0 32 ............................. GGCATAGTTCCAACATACACGCCTATAAAAGA 903631 29 100.0 32 ............................. CGCAGGACATTATTAATAACAACATAGAAGCA 903692 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACACGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGCTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTATAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGCTTAGA # Right flank : TTTCAGTAGGGTTCAGCCCGGGCAGTTTCCCGCCCGGTCTTCCTTACTTACGCATTCGACCAGCTCTGGATCGAATCCGCACTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAAAATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATACCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCACTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGATCGCCGTTGCGTAATCCGGATACAGACCCAGACTTACCGCTGTATTAATCGCCGCCCCCAAACTTGCACAGCCGTTAATGGCGTTACGCCGTGCCGGAAGGTTGAACACGTCGGCAAAAATTTGCATAAACAGATCGCTGTTTGAACCGCCGCCAGTAATGATCACATGTTTGGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCATGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2757589-2757022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGBP010000001.1 Escherichia coli strain P24-5 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2757588 28 100.0 32 ............................ ACCCACACGGATCCGTCATACGTGTAAACAGT 2757528 28 100.0 32 ............................ GCCAGTTGGAGCTGGCGACAGTCATTCATACC 2757468 28 100.0 32 ............................ TGAAATAAAACGTTATCAGCTCAAGGCTCGGC 2757408 28 100.0 32 ............................ TGCTCGCGCTGTAAAACACGCCCTTTACGCCG 2757348 28 100.0 32 ............................ GCCATTGCATACGGTGTAGTATGTTTGGCGAC 2757288 28 100.0 32 ............................ GTATATCGCTAAAAACTACGGTAGCGGTGTTG 2757228 28 100.0 32 ............................ TGATGATGGATGTGGCACAGGGGAATTGCTCG 2757168 28 100.0 32 ............................ CATGGAGCGGCGTAACCGTCGCACCGGCAGGA 2757108 28 92.9 32 ......C...........T......... GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 2757048 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCATATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCGGTTCATCCGACCAGGATTGTGACTGTACATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTCAGAGTGAAATGTAACTCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGTTATTATTCCA # Right flank : ATCCATAACCCCATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2768598-2766767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGBP010000001.1 Escherichia coli strain P24-5 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2768597 28 100.0 32 ............................ TCGCGGCGCGCGCGGCGAAAGCTATCACTCTT 2768537 28 100.0 32 ............................ CCATTCGCTTACAAAGCGACTGCTCTACCAAC 2768477 28 100.0 33 ............................ GTCGGGCGTAACCCCATCATTTTTATTATTTCC 2768416 28 100.0 32 ............................ TAGTTAATTTTTCATTAACCCACGAGGCGATC 2768356 28 100.0 32 ............................ AAATATAGACGATATTCTTGAGGATCTAGCTT 2768296 28 100.0 32 ............................ CGTTGCAAAATACATCTGTTCAATCTGTAACT 2768236 28 100.0 32 ............................ AATTGAGGAATCAAAATGGCGCACAATATCTG 2768176 28 100.0 32 ............................ GCCATGTTCTCACCCTCGTAATGTGCGCGAAC 2768116 28 100.0 32 ............................ GCTCTCCGTTTCTGTTCTTTGTGTGGTAAAGG 2768056 28 100.0 32 ............................ TCACTATACGCATGCGACAGGTGTGTATATGT 2767996 28 100.0 32 ............................ ATCATCGCTTGCACAATGGGACGGTTTTCAAG 2767936 28 100.0 32 ............................ GGTCACCCTGGATCAACTCAAACCACAGCCGC 2767876 28 100.0 32 ............................ ATGATTTCATAATGATGGGGGTGAAGTCGGTT 2767816 28 100.0 32 ............................ CTTCGGGCGGGGGCGGCGGCGCTTTTCAGTGA 2767756 28 100.0 32 ............................ GCAAATAGCGCCGCAGCGGCGCATACATCTGA 2767696 28 100.0 32 ............................ TTGTCCCAAGATTTATTAATGACGCAGTGGCA 2767636 28 100.0 32 ............................ TGGGCGGCCACGGCATCAGTTAAAGGGCGAGG 2767576 28 100.0 32 ............................ ATTTCTGTGCGGCCTCTTTGTCGCCTTCAAAC 2767516 28 100.0 32 ............................ AAGTCGCACATTCGCTACAGCATCAACTTGAA 2767456 28 100.0 32 ............................ GTTTGCACGGTTCCAAATATCTCGCGTTGATA 2767396 28 100.0 32 ............................ TCAAAATTATATTTACCGTCCTGACCAACAAA 2767336 28 100.0 32 ............................ GAATTATGTTGCGACGTGGTGCGCGCTCGAGC 2767276 28 100.0 32 ............................ AATAACGGGGGGAAATAGCGTTTTGATCAAAA 2767216 28 100.0 32 ............................ TGATCATATGTGTAGCAGCGGTCTTTCATGAC 2767156 28 100.0 32 ............................ ACGCCGCGTTACCCGTTCGGTAATATTCGCGG 2767096 28 100.0 33 ............................ TTTGATGTAATATAGGTAAATACTTACCAATAT 2767035 28 100.0 32 ............................ GAAAAACTCATTCCACTTATCTGAATGATTTG 2766975 28 100.0 32 ............................ GAGCTAAAAAAATCTACTGCGTATAATGAGAT 2766915 28 100.0 33 ............................ AATCACTATTAAATACCGTTAATTCCGCGCTAT 2766854 28 100.0 31 ............................ AACGTAGAGGACCAGCTGTCGAATGCAGCAA 2766795 28 89.3 0 ....................T...C..T | C [2766771] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCGCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCCGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGCAAGAATAAAAAAGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGCAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACGAAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //