Array 1 79200-77845 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAV01000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_8132_R1 NODE_7_length_195171_cov_1.61194_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 79199 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 79138 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 79077 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 79016 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 78954 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 78893 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 78832 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 78771 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 78710 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 78649 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 78588 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 78527 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 78466 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 78405 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 78343 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 78240 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 78179 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 78118 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 78057 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 77996 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 77935 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77874 29 96.6 0 A............................ | A [77847] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97252-95332 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAV01000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_8132_R1 NODE_7_length_195171_cov_1.61194_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97251 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 97190 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97129 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97068 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 97007 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 96946 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 96885 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 96824 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 96763 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 96702 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 96641 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 96580 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96519 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96458 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96397 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96336 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96275 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96214 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96153 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96092 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96031 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95970 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95909 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95847 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 95786 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 95725 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 95664 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 95603 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 95542 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 95481 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 95420 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 95359 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //