Array 1 660-2008 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFL01000009.1 Pseudomonas aeruginosa strain Pae_CF67.06o CF67.06o_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 660 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 720 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 780 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 840 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 900 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 960 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 1020 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 1080 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 1140 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 1200 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 1260 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 1320 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 1380 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 1440 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 1500 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 1560 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 1620 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 1680 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 1740 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 1800 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 1860 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 1920 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 1981 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12527-10883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFL01000009.1 Pseudomonas aeruginosa strain Pae_CF67.06o CF67.06o_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12526 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 12466 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 12406 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 12346 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 12286 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 12226 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 12166 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 12106 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 12046 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 11986 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 11926 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 11866 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 11805 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 11745 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11685 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 11625 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 11565 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 11505 28 100.0 31 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 11446 28 57.1 32 NNNNNNNNNNNN................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 11386 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11330 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11270 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 11210 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 11150 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 11090 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11030 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10970 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10910 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //