Array 1 37913-35867 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWO01000020.1 Salmonella enterica strain BCW_6259 NODE_20_length_106460_cov_1.87199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37912 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 37851 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 37790 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 37729 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 37667 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 37606 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 37545 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 37484 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 37423 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 37362 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 37301 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 37240 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 37179 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 37118 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 37057 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 36996 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 36934 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 36873 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 36811 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 36750 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 36689 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 36628 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 36567 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 36506 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 36445 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 36384 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 36323 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 36262 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 36201 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 36140 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 36079 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 36018 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 35957 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 35896 29 89.7 0 A...........TC............... | A [35869] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55297-54171 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWO01000020.1 Salmonella enterica strain BCW_6259 NODE_20_length_106460_cov_1.87199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55296 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 55235 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 55174 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 55113 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 55052 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 54991 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 54930 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 54869 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 54808 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 54747 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 54686 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 54625 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 54564 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 54503 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 54442 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 54381 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 54320 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 54259 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 54198 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //