Array 1 208168-209230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEAMR010000022.1 Streptomyces sp. AV19 Scaffold_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 208168 28 100.0 33 ............................ GGCCGTGGCGTCGGCGTCCATGGCCCGGAACTC 208229 28 100.0 33 ............................ TGCTGCATTCGGCAGGGGGATCGTCCCGGACAT 208290 28 100.0 33 ............................ TCGGCGATGGCCCAGGTCATCCGGGATCTCCGC 208351 28 100.0 33 ............................ GCGCCGGAGGTCCTGGGCCGTGTACCGGCCGAC 208412 28 100.0 33 ............................ GCTCGCCGGCCTCGCTCAAGACAAGATCGCCGA 208473 28 100.0 33 ............................ GCGTAGATCCAGACAGTGATCGAGGTTCGGTCC 208534 28 100.0 33 ............................ GCGCAGTTCAGAGCCCTGGCGGAGAGGAGCGTC 208595 28 100.0 33 ............................ GCGTCCGGACGGTTTATGCCGTACGGGCCGACG 208656 28 100.0 33 ............................ CTGGTCGATCGTCGCGACCGTTGTCCGGCACTG 208717 28 100.0 33 ............................ CCCCGACACCGCCCCGCCCGCCACCGTGCCCGC 208778 28 100.0 33 ............................ GCGTGTCAGAGGTCAGAGGGGAGTTTTTCCCCG 208839 28 100.0 33 ............................ GATCTGGCGGTCGGCGATGACGGCCTGGACGCG 208900 28 100.0 33 ............................ CCCCGACACCGCCCCGCCCGCCACCGTGCCCGC 208961 28 100.0 33 ............................ TGCAGGGGGGAGTATGGGAAGGCAGAGATACCG 209022 28 96.4 33 ........................A... GTTCTCCCTCGGACCAGGCAGCACGGTCGCGGC 209083 28 82.1 32 ...A..............A...CG..C. CGCTGCGTGCTCCCCTCAGTCGGTGGCGCCAA 209143 27 82.1 34 ..G..........A...-....A..G.. CCGCCTGCCCCTCTCACCAGTCGAAGTGGTTCCC 209204 27 82.1 0 A............A........-G..G. | ========== ====== ====== ====== ============================ ================================== ================== 18 28 96.8 33 GTCGTCCCCGCGCGAGCGGGGGTTGCTC # Left flank : CTCCGCCCCGCGTGGTACCCCACGAACGGGATCCCGATCCTGATGAGCTCCCCCGTCGAAGAACCCACGCGCGGCGGCATCGACGTCCGAGGTGAACATCCACCGACACCGCTCCCGCTCCGGTCGGCCGGAGGCAAAACCAGTGGCACCCTCCATGCCAGCGGAGATCAGGATCTTCACCATTCACCCGTTGTATCGCAGGTGGGGGCGCGTCGGCAGGGGTCCTGCCACACTTCTTGCATCGCCCCCAGGGAAGGCCGGGCAGCCGCTCACCCTCCAGGGGCGTAGGCCCCCCGAACCTGCACGCCGCGGCGACTCCATCATGTGCCGCGACGCTGATGCGTTCACCGCCTCCGAGCTCTTTCAGCCGGGGTTACACCAGCTGACACGGAAGGCAGCTATATGAAAGCCTGATCTCTGTGTTCGAAGATGTCCCGGCGACGCCAAAGCTACTGAATGAAAAGGACGTTGATCGCCAGGAAACGGGCAGGTCAGTTAGG # Right flank : CGGTCCCCTGTTTCTCCCCAAGGGGCCGCCGCCCACAGCCATTACACAACCGGGGGTCACCCGTACCAACCAGCGCACTCGCAGCACGAGCGAGCCCCAGCCCAGCCGTGGAGCCGAAATCTCAGCGTCGGTTCCGGGCCGACAGAATGAGTCCGTCGAAGTCAACCGGCCGCCATCGGTCACGGCCGGCTGTCCGGACCGCCCACCCCTGTTCATTGGAGGCAGGCTCCACGAGGACCACTTGGCCGTCGCCGATGCGGGTGGCCAGGAGCTCCCACAAACGGTCTCGGATGCGACGGCTGGGGTTGCCGACGAAAACGCCCGCGTTGACTTCGACCATCCAGCGCGTGAGGTGGCCACGGAGTCCTTCGGGAGCCGCGATCAGCACGATCACTGTCAACGAGTCTGCTCCTTGGGCGTGGTCGCCTCTAATTCCGGACCTATCACCGCGAGATGGTGATCGCCCATTTCAGCCGGTGTGAGGGATATCGAAGACGTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCGAGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218872-220641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEAMR010000022.1 Streptomyces sp. AV19 Scaffold_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 218872 28 100.0 33 ............................ TCTCCTCGCCGGAGATAAAGAGCTCGCTGGCGC 218933 28 100.0 33 ............................ GCGGTCCGTTCGCGCCGGCCGCCGTCGCCGACC 218994 28 100.0 33 ............................ AGTGGTCCCGCCGGCGGCTGGGTGGGTGGGGCC 219055 28 100.0 33 ............................ ACGCCGCGGGATGTCGCCGGTGCCCTCCCGCAG 219116 28 100.0 33 ............................ GTTGTCTCCGGCAGCCGCCCACGCGCGGGCAAA 219177 28 100.0 33 ............................ GTTGAGTAGGTGGTCTTTTTGGTGACGTACGTC 219238 28 100.0 33 ............................ TCCACTGACCCACCACGGTTGCACCACTGATGA 219299 28 100.0 33 ............................ TAGTTCCGTGCTTGATGACCATCTGGACGGCGA 219360 28 100.0 33 ............................ CTGGGCGTCAACAACGAGACGGTCGAGATGGCC 219421 28 100.0 33 ............................ TTCTTTGCGGGGGATCTACGCGACGCCAACACT 219482 28 100.0 33 ............................ GGCGACGCCGCCCCCGTCGTCCCGGCCCGGACC 219543 28 100.0 33 ............................ TGGGTATAGCGTGCGGATTGTTCTGCGCAAAAC 219604 28 96.4 33 ........................A... TTGGGCGGGTCTCGGGTGGCCATGGGTCCCGGT 219665 28 92.9 33 ............C.A............. GGGCATCGCCCGCAACGGCTTGTTGCCCACGCA 219726 28 89.3 33 ..............A........CA... GGCCCTGGGGATTCATTCTCCGTCCAAGGTTGC 219787 28 89.3 33 ........T.....A......A...... CGCCGGTCAACCTCTCCGCCTGCCCCACGGGCA 219848 27 89.3 33 ..............A.-.....G..... GGCCACGGACGCGGTGTTCGCTCCATTTCTGTG 219908 28 96.4 33 ..............A............. GTTCGCGGTGCGCGCAAAGGTCGATGACACCCG 219969 28 89.3 33 ........A.....A.........A... CTTGGGGCTATGCCTGACGCTTGCTCAGGTATT 220030 28 100.0 33 ............................ GAGGTAGCCGATGCCGGCGTCGGTGATGCAACG 220091 28 89.3 33 .......T.....A..........A... TGCGGGTGTCCCGGTTGATCGTCCAGGCACCGC 220152 28 89.3 33 .C.........A.A.............. GGCGCGGATCGTGCTGGACGGCCCGCCCGGTTC C [220162] 220214 28 89.3 33 ............CA.........G.... CATGGAGTGTTCGGTGGATTTGGCCTGGCAGCG 220275 27 89.3 34 ..............A.......-..G.. CCGCCCGGGGCAAGCGGGATTTCTCGGCGAGCCA 220336 28 85.7 32 ..G.........CAC............. GCGGTCGCTGACTCCTTGGTGGCCAGGGAGTG 220396 28 78.6 33 ..T........TCA..........AT.. TCTCGACGGCGGCATGTTCCGCTCGACAGGGGC 220457 27 92.9 33 .............A...-.......... ACCGCGGCCCACGCCAATCACGCGCTCGCGCTC 220517 28 82.1 70 ......T......A...A....A..T.. TGCATATTTTGGCGGCACGATGGAGCGAACTCAGTCGTCCGTACTGCGACATCCTGACGTCCAGCCTGAG 220615 27 82.1 0 .....A.T.....-T.........A... | ========== ====== ====== ====== ============================ ====================================================================== ================== 29 28 93.8 34 GTCGTCCCCGCGTGGGCGGGGGTTGCTC # Left flank : CATGTGAGCCCGGCTGCACGAACGTCTTCGGCGCCCTTGGCCCACAACCTCTGAAAGGCAGGAGTGGCCTTCCCCAAGTCGTGCACCCCGCACAGCCAGGCGAAGAACCGCCGGCCTCGGCCGTCCCCGCCGCCCGCGATCGCGTCCAGGGCGCGCTGGGTCGAAGGCGCCAGGAACCGATCCCACATGATCTCGGCGATCGCGGCGGTGTCGAGTAAGTGCGAAAGGAGCAGGTTCTTCCGGCCGTTGGCCTTCTCCTCTGATTTGCCCCAGAGCGCGCCGAGAGCCTTGATGACATCAAACTCCGTGTCGGCGGTGACCAGCATCAACTACCCCTTCCGCAGGCTTGTTCGGCACATTAGCCTCTGCCTCTGACAGAAACCTCTCGGCTTGACAGGTATACGTAGATGTGGTCTTCCGAACAGCACGCTCGTCGAGGCAGCCGAAACCAAGTGAATGAAACTGAGCACGGATGCGGGTAACACCGCAGGTCAGCAAGT # Right flank : CTGAGCCGTCCGTCTGCAGATGGACGGTCCCGGGGGCATCACCATGCAAGGGTTCCTCGACGGCAACGGCCGCGTACCCCAGCTCAATTCCCCGGGTCCGGCGCCCCGTCCGAGAACCTCCGCGCCAGATCGCGATGGATCGCCGCAGCCCGGTCGGCCTGGAGGCCGTGGACGCTCGCTCCGGGCATCCTGCCGATGCGCTCCACCTGTTCGGCGAAGCGCAAATGCCGACGGTGGGCGTGTTCGCGGCAGGGCAGGCAGGTGACGCTCTCCGGGTGGGCGGAGGTCATCGCATACGGCACGCGCAGCCCGCATCCTGTGCTGACGAAGGCCGGCAGGTCGGCGGCGAGGCCGAAGGTAGACGCGATCGTGGTGCGGATCGCCGCGTGCGCGTTGATCACGTCCTCACCGACGTGGACGTGCGGGTCCTCCCCGCTCATCAGCGGTCGAGCCGACCCGACCGGACCTCGTCGACGAACGAGGCCCAGGCACGCACGGGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGGGCGGGGGTTGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //