Array 1 34216-35769 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYH01000102.1 Escherichia coli strain KS-NP014 sequence102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34216 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 34277 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 34338 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 34399 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 34460 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 34521 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 34582 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 34643 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 34704 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 34765 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 34826 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 34887 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 34948 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 35009 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 35070 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 35131 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 35192 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 35253 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 35314 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 35375 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 35436 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 35497 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 35558 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 35619 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 35680 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 35741 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51271-52032 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYH01000102.1 Escherichia coli strain KS-NP014 sequence102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51271 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 51332 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 51393 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 51454 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 51515 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 51576 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 51637 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 51698 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 51759 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 51821 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 51882 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 51943 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 52004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //