Array 1 8297-13562 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJD01000039.1 Xanthomonas oryzae pv. oryzae strain GD408 scaffold38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8297 31 100.0 34 ............................... TCCGTTATTGGCCGTGATGATCTTAATGATGGCA 8362 31 100.0 34 ............................... CCGAGTGCCCTCACAATGGTGAGAGTTTGATCCG 8427 31 100.0 35 ............................... GCATTTTACTCGACGTACATTATGTCGGCGGAGCG 8493 31 100.0 34 ............................... AAGGCTACCGGCCAGCTGTCTGGCACGCCAAATG 8558 31 100.0 32 ............................... GACTTGGCTGCGCAAATCTACGACCAATGGGA 8621 31 100.0 35 ............................... ACTGATGTGGATAGTCAGGCTGGCGGCGCCTTACA 8687 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 8754 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 8819 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 8885 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 8949 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 9013 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 9079 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 9144 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 9208 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 9273 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 9337 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 9401 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 9466 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 9532 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 9597 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 9661 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 9728 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 9792 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 9859 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 9924 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 9990 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 10055 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 10119 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 10185 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 10250 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 10315 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 10382 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 10450 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 10515 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 10580 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 10646 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 10711 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 10778 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 10845 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 10910 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 10977 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 11042 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 11107 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 11172 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 11238 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 11303 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 11367 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 11432 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 11497 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 11563 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 11629 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 11696 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 11761 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 11827 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 11893 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 11958 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 12023 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 12090 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 12156 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 12221 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 12287 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 12353 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 12420 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 12486 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 12550 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 12615 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 12680 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 12746 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 12812 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 12877 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 12942 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 13008 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13074 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13138 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 13205 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 13270 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 13335 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 13402 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 13467 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 13532 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 81 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //