Array 1 219588-218934 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBTF01000002.1 Pediococcus acidilactici strain FAM 18969 FAM18969_scf0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 219587 35 100.0 31 ................................... TAATTTAGAGCTGTATTTGAATAAGCACCCT 219521 35 100.0 31 ................................... TAGCATGTCGGCACTCGTCCCGCCTACCCGT 219455 35 100.0 31 ................................... CGTCTGGGGTTAAGATTGCGACTGTGTCGCA 219389 35 100.0 31 ................................... CGTTCCCACATGAGTGATTACTGGAATGCGC 219323 35 100.0 31 ................................... CGTTCAGTGTTGAGATTGTAGGAAATTGTTA 219257 35 100.0 31 ................................... CGGTCGTTTATTGAAATTAGAAACGCGGTTA 219191 35 100.0 31 ................................... CACGATTTACCGTTTTAGGAATGATTTAGAT 219125 34 82.9 123 ........-.A...................GGC.A TGAAAAAAAGGGGAGTTTAATAATTAATGCTCATAGAGTTTAAATTTGGTATAATGCGAAATGGAATTTGAGAATGATTTGGTATTGGCGATTTACTCACAATAAAAATAAGTTGCTTTTATT 218968 35 94.3 0 .................................CG | ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 9 35 97.5 43 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Left flank : CCAGGACTTAGTTATTCAAAAATATTTAACTAAGATTGAACGAGTTTTTGCCGAAGGGTTGGTGGATGAGCAACGTAACCAAATTCATGATCAGGTAAACCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGACTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCAAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : TAGAGCTAAAAATCTTAGCTCAACGAAAAACGAAAACTCCTATAAGTTAATGATTACTTTAACTTATAGGAGCTTTTTGTAGTTAGAGAAGGATGTTAAATAATTGAATAATGCGTCTTATTGCGAGAGACAATAAACATTATTTAAAATTGAATACGAGAGTAACGTTAATTTTTGAACAGCTCTCAAAAAAGAAGAGTAGAAAGATAAGTTTGTTTGTAAAATTAAAGTTAAGCTTTTTTCTCATAATTTATGACTTCCTTTGTATTTGTTTTATAAATTTATAATAAAAGCAAAATTTCATTTTATCAAAATCATCAACAATTTTCGAAATTATTATACCCCATAAACTTAGAAATCACAATAAAATAAGTACAGCGACCTTATATTTTATCCAGTAGAACACATTAAATAACTGATATAAAGAAAAAACTACAGACAACAAAAACAGCCCAACCGAATCCCAATCCAGTCAGACCGTCTTAAATTTCCTACATCAC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //