Array 1 20624-19817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJU010000064.1 Photorhabdus thracensis strain PT1.1 Plum_PT1.1_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20623 28 100.0 32 ............................ GTACCCCGTTTCAATAATCCTACTTTTGCAAT 20563 28 100.0 32 ............................ TCCGGGGTATCCTTATTCCAACTTAACAGCGC 20503 28 100.0 32 ............................ TCCGTATCCACCGCTACCGCTGACATGTCGGT 20443 28 100.0 32 ............................ TGGTCGGGTTGGATGCGTTCAGTGCCGGATTT 20383 28 100.0 32 ............................ TTTCCAATTGGGTATCTCTGGCATTCCAAACA 20323 28 100.0 32 ............................ CGGTTGAATACCGTCCAGCAAGCGGCGCTCGT 20263 28 100.0 32 ............................ ATACTCCAAATCATCACGTGAATGAGCACCTC 20203 28 100.0 32 ............................ GCTAGGTCCCGCAACAAGTGATGCAGTGTTAT 20143 28 100.0 32 ............................ AAATTAATAATAAGCTTCCTTTTGTATTTCCA 20083 28 100.0 32 ............................ TTCATTTGCCGCGCAAATTCGGCTTTATTACC 20023 28 100.0 31 ............................ TCGGCGTTGATACGTCGCAAGCGGCAAAAAT 19964 28 96.4 32 ...............A............ ATCCACTGGCGTGGTTTGCCCGTCACATTGGG 19904 28 100.0 32 ............................ GCTTGCAGTTCTAAAGCATATGCAAGATAACA 19844 28 75.0 0 ...........T.........AGC.CGC | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGTTGCAGGATTTACAAGCGTTACCTTGGTTAAAAGGGCTCAGGGATTATACGGAGGTGACCGATAGTCAGCCAGTACCTCAAGACACTCAATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGCAACGCAGAGCGGCTTCGTCGTCGTTCGATCAAAAAGAGGTGGTTAACTGAGGAGCAAGCTCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAGTCTTAAGAGTTTGTCATCAGGGCAAAGCTTTCCGTTGTTTGTCGAACAGGGACCAATAGAAGACAGACCAACTCCAGGAGTTTTTAGTTCTTATGGATTAAGTGCATCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTCTAAAAAGGGTTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGGTTAAAGCTAGTATTTAACA # Right flank : CCAGTTGAGCGCGCTAGAAAAAGTTAATTTTGCTTGATATAGGTTATTTCTTATGCTTGTAAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTGAATAGCCACTTGCGGGTTGGTCCCGCCATTACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACGGGGTGATAGCCTTTGGGAACCATTACCACATCCTTGTTATAAACCGCCATTGATTCATCCAGTGAATAGTCATCGGTATAGACTCGTTGCATACAGAATCCCTGTGATGGATTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAGCCTTCGTCGGTAAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGTTGGTTGAAGCCGCTCCCACGTTTTTCTGCATCAATATCCTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9669-11856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJU010000082.1 Photorhabdus thracensis strain PT1.1 Plum_PT1.1_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9669 28 100.0 32 ............................ AATACGAAAATCGCGTCATGCTCGAAATCAAA 9729 28 100.0 32 ............................ ATTTGCCATATATCTGAGAGTGTGCCCCTTCG 9789 28 100.0 32 ............................ TTGTCGGTGGCTTTTAAAGGGGTTACTTTTTT 9849 28 100.0 32 ............................ CGGCTGAATTTAGATTTAAACAAGTCGGTACA 9909 28 100.0 32 ............................ CTCAAGTCGATGAACCTTCTCCAAAAGGTAGA 9969 28 100.0 32 ............................ AACATGTGTATCTGAGCATTTATGATCATGTG 10029 28 100.0 32 ............................ AAGAGGGCGCATAAGTGGGCGGTTCGGCGAGG 10089 28 100.0 32 ............................ CTGCGGAATACGACATGATACGGTTTCAGAGC 10149 28 100.0 32 ............................ AGCAACTGCAACACATGCTTGTTCTGGCAAAA 10209 28 100.0 32 ............................ GGTGGCTGTGGCATCGGTTGCCAGTGAGTTAC 10269 28 100.0 32 ............................ TGTTGAATTCCGGTGCCTCAATAAATCGGCTA 10329 28 100.0 32 ............................ GAACGGATGATGATCTGTGATTACGATATATT 10389 28 100.0 32 ............................ GTTACAACGGCAACGACTGGATACAATCCCTT 10449 28 100.0 32 ............................ TATGTACTCAGCCAAATCACCAAAGCCGAATC 10509 28 100.0 32 ............................ ATCACCGAAACCGAACGCATGGGGATCATTAG 10569 28 100.0 32 ............................ AGTTGCCGGCACCGCATTATTCGCCTTATTCA 10629 28 100.0 32 ............................ TACTGGATACGTATTAACATCATCTTCTGTCA 10689 28 100.0 32 ............................ AAGCCAAAGCCTGATTCATCACTGAGTTTTGG 10749 28 100.0 32 ............................ TGTGTTAAGTGGAATGAATTATTGATCATTGT 10809 28 100.0 32 ............................ TCTACGTCCCGCAACAAGTGATGCAGTGTTAT 10869 28 100.0 32 ............................ ACTCATATCTTGTATACGAGATCTGTATTCCA 10929 28 100.0 32 ............................ ATCGAGAAGATTCACATGTCCCACATGAAACA 10989 28 100.0 32 ............................ AATGCAAGACTTTGTTGATCAATTCATTCTCG 11049 28 100.0 32 ............................ TATATTAACCACGTATGTAAAGACACGGGAGT 11109 28 100.0 32 ............................ GCAAAGCCCATTGCTTTAATCGTTTTTAATAC 11169 28 100.0 32 ............................ AGTTAACTTCTTCCAGATCAACTACAGCAATA 11229 28 100.0 32 ............................ GCTGGTATCAGCAAACTCTCAAGTCGATGAAC 11289 28 100.0 32 ............................ TAACCGCTCTATGCGCCACAACTCGGACTTTC 11349 28 100.0 32 ............................ ATAAGCGCCTTGCTAGTTTTAATGTGCAGATA 11409 28 100.0 32 ............................ AAAATGGTTAATTATTTTTTCGGGTAGGTTTT 11469 28 100.0 32 ............................ ACTAATGGAAAATGCGGTTGTTTGATTGGGGA 11529 28 100.0 32 ............................ ATGAAAGGTGTTTAAATTGGATTTGAATAATG 11589 28 100.0 32 ............................ ATTGATGATTCTTCGAGAGAGTTCATAAACTC 11649 28 100.0 32 ............................ TGTTAGAGCACCTGTTATGGCTGGAATGTTAC 11709 28 100.0 32 ............................ GACTTCGATACTTGGAACGGTAAAGAGTGGGT 11769 28 100.0 32 ............................ AGAGGAAACATTATGACGAAGCGACTAAGTTT 11829 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGAGATCATGTTCATATGCTGATTGAGTATCCACCGACCGTTTAGCTATCGGTATGGGTTAACTCGCTGAAAGCAGTCACCTCCCGTCGCTTACGTAATGAGTTTCTGGACTGACGCGGAGCATACGGAAAGGCAGTTCTCTGGTCTCGCTCCTACTTTGCGGGTTCATGCGGTGGAGCACCGCTGGAAGTGGTGAAACAATACATTCAACATCAGCGTGGCTGGTGATTCTACAGGCTTTTCAAGCCCGTCCAAATTCCCCTCCCGCCTGATGTCGGCGGGAGTACCCTTTGGAGGTAAAGATGGCAGGCGGCGCTTAGGTTCCAAATATTGCCATAAGATACCGTATTTCTACGGACCCTAATTTTGACCCTTTTTTATCGATAATCAATAACGTTTTGATTTTAAAGTAAAATAAATTAGCCCTTATAAAAAGGGTTTTTTCACTTTTTATAACTATACTCTTTGATAGTCAGCAGGTTAGAGGTAATATGCAACA # Right flank : ATCCAGTAACTGCCTTTCGAGAAATATAATATAGGTTAATTGCGCAGTCGTGGAGCCAGTAACTGATTACGGATGGATTCTGCTAACTCATCTAGGGAAGGTTGTTCTGGATGGTCATCGGATGCTTCATAGGATAATTGCGCTTCGGCTAAATAAGTATGTACAGGCTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAGGCAGCATTGGATGCAATATCATCTTCTTGGGGTTGTTCCAGAGAATATTCCACATCAATATCTACGATAACGCCCAAATAACCCAGAAGCTTGTGACGTACTTGTTGGCCGAGACCGAATTTGCTGGCAATAATCATAGCCACCTCCAAAAAAACCTTGCATTGATACGAATATGAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTAGTTGAAGTCATTTTCTTGCTTTAATAATTGCGAGAGCGACTTCACCTAATTTCAGGTTAGCTGTAGTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28528-30776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJU010000018.1 Photorhabdus thracensis strain PT1.1 Plum_PT1.1_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28528 28 100.0 32 ............................ GTAATCTTCGTAAGAAAGTTAGGATTTTTTCT 28588 28 100.0 32 ............................ AAGACGACTTAGCGCTGCTCCACTGTTTTTGA 28648 28 100.0 32 ............................ TGTCTGATGGCAATGAGCTACAGCTATGAGTT 28708 28 100.0 32 ............................ AGGTCCCCCTCTTCTGTCAGGAAGCGGATAGC 28768 28 100.0 32 ............................ AATTCTAAAAGTGACGGGTGATATTGTTGACA 28828 28 100.0 32 ............................ CTTAACTATTTGAATTAGTTCCGATATCGGAA 28888 28 100.0 32 ............................ ACTCTGGTAACATAATAGTAGCAGTCGCCGGA 28948 28 100.0 32 ............................ GTTGTTCGTGAACGGTAATTTTTGCTGTGCAT 29008 28 100.0 32 ............................ TAAGTGAGCTGCGGCACGACCGCGTAGACGCT 29068 28 100.0 32 ............................ TCTATTCCAACTGTGATATCTTCGGACTCTGA 29128 28 100.0 32 ............................ GGAAGTGCCTAAGTAAAGCGAAAGCCGGGTGA 29188 28 100.0 32 ............................ AGTGAACTCATTCCCGCCAATCGTGACGAAGC 29248 28 100.0 32 ............................ TGCTGTTCCCGATAAGCAGGAAAACTTTTCTG 29308 28 100.0 32 ............................ TCAACAAGCGGAGAGACAAACGGTGCCATCCG 29368 28 100.0 33 ............................ CGATTGAATTTTGTTGTTCAACGATGATTCAAC 29429 28 100.0 32 ............................ CAGCGATTGTTGCGGAGTAAAAGCAATGCTAC 29489 28 100.0 32 ............................ TAATGAATTGATGACATCTTTCAACTTAGAGG 29549 28 100.0 32 ............................ ACTATTTGCATCATCATTGTATCATGTAATAG 29609 28 100.0 32 ............................ CAGCAATTGTTGCGGAGTAAAAGCAATGCTAC 29669 28 100.0 32 ............................ TGCTGATTAACGATTTCATTCTGCTGCTCCAG 29729 28 100.0 32 ............................ TGCCGATAATTGTTCACGATTACGAATGCCAT 29789 28 100.0 32 ............................ TGAATGGGCACGGAGGAGAGATGAATAATAGT 29849 28 100.0 32 ............................ GGTTTGGCGTGGACTCGTCAGCACTCATCTGT 29909 28 100.0 32 ............................ TAAAATCAGAATGGGACGTTTGCCCACAATCA 29969 28 100.0 32 ............................ GTGAGAACGTTAAGACTGAACTCACGGGTAAA 30029 28 100.0 32 ............................ TTGAGTGGAGAAAATACAGAGTGTTGCTTACT 30089 28 100.0 32 ............................ GTCGTCATTGGTCATTACGTAAATGGCGTAAT 30149 28 100.0 32 ............................ ATTGCCGAAACCGAACGCATGGGGATCATTAG 30209 28 100.0 32 ............................ TATTTAACAATAATTACAATCGTTTCGTATGT 30269 28 100.0 32 ............................ AAAATAGGGTGAAGCAATATCAGAGATTACGT 30329 28 100.0 32 ............................ TGAGCTCATTGAGTGTCTGCTCATTGTTTTGC 30389 28 100.0 32 ............................ AGCCTAAGGGGTGATAACTATGCCGCAATCAA 30449 28 100.0 32 ............................ TTTCATCAAGTGGGAGACATGACGCCACGCCA 30509 28 100.0 32 ............................ TGTTGTTGGTGGTCAAGAAAAATAGCTGTTAT 30569 28 100.0 32 ............................ CGATAGTAACCCTTGGTACGCAAGCAAAATCC 30629 28 100.0 32 ............................ AAAGAGAGAGATAAAGATCTCTATAGAGAATA 30689 28 100.0 32 ............................ AAAAGAAGGTGTTTGCGGCTGCGTATGGTATC 30749 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAATTATATGCCTGATAATCATCGTAGTGGTAAATTGTTGGAACGATTGGGCTTTGAACGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGGATTTGGCAGGATCATGTATTAACTGCACTGACAGATGAAAAATGGAATGGAAAAAGTTAATTCTCAGATTGTACTGCCAGATAAACCAGGAACTGTCTAGTTACAAAGTTATAGCAGAACTTAAATTACCGTCTCGTCGTAAGCCCCATGATGGGGCTTTTGCTCATTAATGGACAAACAGATGTAGAGAGAAGGAGGGAAATGTAATTTGAAAGATGGTGTTTCTTCATACCTTATTTTTGACCCTTTTTTCTTAGTTAATTTTAATACATTGTTTTTTAAAGAAATGTTATTTACCTCGTAAAAAAGGGTTTTTTTACTTTTTATCACTCTACTCTTTAAAAGTCAGCAGGTTAAGGTTAGTATCTAACA # Right flank : ATGATTAAATTCAGATTAAATTCAGATTTAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTTGAGCATGATTTTGAGATAAATACGATGAATTTATTGAAATCGCTGGCTGCGGTCAGTTCTATGACCATGTTTTCCCGGGTTTTGGGCTTTATCCGTGATGCCATTATTGCCCGTATATTTGGCGCAGGTGCAACAACGGATGCCTTTTTTGTTGCATTTAAATTACCTAATCTGTTGCGCCGTATTTTTGCAGAAGGCGCATTTTCTCAGGCATTTGTGCCGATTTTGGCTGAATATAAAAATCAGCAGGGAGACGAAGCGACCCGGACGTTTATTGCCTATGTTTCCGGTATGCTGACGTTAATTCTGGCGGTTGTTACGGTGCTGGGTATTTTAGCTGCACCGTGGGTGATTTATATTACCGCGCCGGGTTTTACCGATACTGCGGATAAATTTGCTCTGACGACAAATCTGTTAAGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //