Array 1 1-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWLI01000028.1 Klebsiella pneumoniae strain VRCO0290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 26 89.7 32 ---.......................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 59 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 120 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 181 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 242 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 303 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182114-179221 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWLI01000003.1 Klebsiella pneumoniae strain VRCO0290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182113 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 182052 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 181991 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 181930 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181869 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181808 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181747 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181686 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181625 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181564 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181503 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181442 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181381 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181320 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181259 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181198 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181137 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181076 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181015 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180954 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 180893 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180832 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180771 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180710 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180649 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180588 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180527 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180466 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180405 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180344 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180283 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180222 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180161 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 180100 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 180039 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179978 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179917 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179856 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179795 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179734 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179673 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179612 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179551 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179490 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179429 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179368 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179307 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179249 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //