Array 1 47-361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCS01000380.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 47 35 100.0 36 ................................... ACCATCTGGTACCCTGTACATGATACCCTCACAATT 118 35 100.0 34 ................................... ACAACAAACCGCAGCCGGAAATGTTTGAACGCGC 187 35 100.0 32 ................................... AATTTAGTAAAATGTGCCCTCGTGGCATTCGT 254 35 100.0 38 ................................... TCAATGACTTAAGAATCATAACGGGTATCTTAGAAAAA 327 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : ATACATCTACATGAAAAAAATGAAAAAAGGGACCGTACAATTCATTG # Right flank : CTCAACTTGCCGGAAGTACATATTGCCACTTATCCTGTCTTAATCCTTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 192-1235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCS01000260.1 Bacteroides fragilis str. 3783N1-2 gbf3783N12.contig.260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 192 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 269 47 100.0 30 ............................................... TTTCAACATTGATAACATTCTCTTTATCTT 346 47 100.0 30 ............................................... AAACCGTTCAAATATCTACGTAACTGAGTG 423 47 100.0 30 ............................................... TTGCCGTGCAAGCTCGTTTATTTCTCCTAT 500 47 100.0 29 ............................................... TTAGAAGCGGCTAATTGAACATTGCACTT 576 47 100.0 30 ............................................... ATGAACCGGAGCAACTTTCGCACCTGTACC 653 47 100.0 30 ............................................... GGTAATTTGTTATATGTTCGTGGAATTTCG 730 47 100.0 30 ............................................... TGATAGCTTTGTTTCTTGCAAGATTAACTA 807 47 100.0 29 ............................................... TCTCGCAGCACATAAGAAGCCATTTGCAG 883 47 100.0 29 ............................................... ACAGGAGACTGTTCTCTTAATACACCAGA 959 47 100.0 29 ............................................... CTAACCTTCTTCCCGCCTCGAATATTCTA 1035 47 100.0 30 ............................................... CATTTCTCCCACACGTATCTATATCCAATA 1112 47 100.0 30 ............................................... AGACCGTGCAGCCTACAACAACACTAAGTC 1189 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //